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The map label for this gene is secF [H]

Identifier: 167625069

GI number: 167625069

Start: 3853673

End: 3854581

Strand: Reverse

Name: secF [H]

Synonym: Shal_3157

Alternate gene names: 167625069

Gene position: 3854581-3853673 (Counterclockwise)

Preceding gene: 167625070

Following gene: 167625067

Centisome position: 73.74

GC content: 44.11

Gene sequence:

>909_bases
ATGGAACTTAATAATTTTAATAAACTAAGCAAATTGACAAAAGCACGTTACCTCTCGAGTATCTTCTCTGTGCTGATTAT
GCTGTCATCGATAGGCATTATTTTAGTCAACGGTTTTAACTGGGGTCTGGATTTTACTGGGGGAATTGTTACTGAAGTCA
AACTCGATCCTAAGATTAAATCGGCGCAAATTAGCGAGCTATTAGCTGAGACCTCAGAGCAGGAGGTCAGCGTGATTTCA
GCGGGTGAGCCTGGTCGTTGGATTCTGCGATACGCAAAAGTAGACAACGCTGGAGCACACGATATTAAAACGGTATTGGC
ACCGTTGACTGATAATGTTGAAGTGCTTAACTCAAGTATCGTCGGACCGCAAATAGGTCAAGAGCTGGCAGAGCAGGGCG
GATTGGCACTGTTGGCGGCAATGTTATGTATTTTGGCTTATCTGAGTTTTCGTTTTGAATGGCGTCTTGCAAGTGGCGCT
TTATTGGCACTGTTTCACGATGTCATTTTCGTGTTGGCCTTCTTCTCGTTAACGCAGATGGAGTTCAATTTAACGATTTT
GGCTGCGGTACTGGCTATTTTGGGTTACTCCTTGAATGACTCAATTGTGATTGCTGACCGAGTAAGAGAAGTGTTAATTG
CTAAACCCAAGATGGCGATTGATGAAATTTGTAGCAGTGCGGTGCAAGCCACTTTTTCACGCACAATGGTCACCAGTGGT
ACAACCCTATTTACTGTTGCTGCGTTATGGATCATGGGCGGTGCGCCACTGCAGGGATTTTCTATTGCGATGTTTCTCGG
GATCATGATTGGAACGATTTCATCAGTATCTGTAGGTACTTGTTTACCTGAGTATTTAAAGGTCAGTGCAGAGCATTACA
AGGTTGAACCTATTAGCGACGCTCCGTAG

Upstream 100 bases:

>100_bases
TTAGGCCTGCTAACCAGTATGTTTACCGGAATTTTTGCATCCAGAGCATTAGTTAACTGGGCATATGGTCGTAATTTTAG
TCGTAACGTGAAGGTGTAAT

Downstream 100 bases:

>100_bases
TGTATTATACCAATCACATTAAATATGTGATCATTCAGCGGGAAGTCAAAGCCCTGTAGGCAAGGCGGATGATTGAAGCT
AATAGTTATTCTATATCGAG

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MELNNFNKLSKLTKARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIKSAQISELLAETSEQEVSVIS
AGEPGRWILRYAKVDNAGAHDIKTVLAPLTDNVEVLNSSIVGPQIGQELAEQGGLALLAAMLCILAYLSFRFEWRLASGA
LLALFHDVIFVLAFFSLTQMEFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKMAIDEICSSAVQATFSRTMVTSG
TTLFTVAALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGTCLPEYLKVSAEHYKVEPISDAP

Sequences:

>Translated_302_residues
MELNNFNKLSKLTKARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIKSAQISELLAETSEQEVSVIS
AGEPGRWILRYAKVDNAGAHDIKTVLAPLTDNVEVLNSSIVGPQIGQELAEQGGLALLAAMLCILAYLSFRFEWRLASGA
LLALFHDVIFVLAFFSLTQMEFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKMAIDEICSSAVQATFSRTMVTSG
TTLFTVAALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGTCLPEYLKVSAEHYKVEPISDAP
>Mature_302_residues
MELNNFNKLSKLTKARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIKSAQISELLAETSEQEVSVIS
AGEPGRWILRYAKVDNAGAHDIKTVLAPLTDNVEVLNSSIVGPQIGQELAEQGGLALLAAMLCILAYLSFRFEWRLASGA
LLALFHDVIFVLAFFSLTQMEFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKMAIDEICSSAVQATFSRTMVTSG
TTLFTVAALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGTCLPEYLKVSAEHYKVEPISDAP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=297, Percent_Identity=37.7104377104377, Blast_Score=205, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32557; Mature: 32557

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNNFNKLSKLTKARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCC
SAQISELLAETSEQEVSVISAGEPGRWILRYAKVDNAGAHDIKTVLAPLTDNVEVLNSSI
HHHHHHHHHHCCCHHEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCC
VGPQIGQELAEQGGLALLAAMLCILAYLSFRFEWRLASGALLALFHDVIFVLAFFSLTQM
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
EFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKMAIDEICSSAVQATFSRTMVTSG
HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
TTLFTVAALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGTCLPEYLKVSAEHYKVEPISD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCC
AP
CC
>Mature Secondary Structure
MELNNFNKLSKLTKARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCC
SAQISELLAETSEQEVSVISAGEPGRWILRYAKVDNAGAHDIKTVLAPLTDNVEVLNSSI
HHHHHHHHHHCCCHHEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCC
VGPQIGQELAEQGGLALLAAMLCILAYLSFRFEWRLASGALLALFHDVIFVLAFFSLTQM
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHH
EFNLTILAAVLAILGYSLNDSIVIADRVREVLIAKPKMAIDEICSSAVQATFSRTMVTSG
HHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
TTLFTVAALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGTCLPEYLKVSAEHYKVEPISD
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCC
AP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]