| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yejM [C]
Identifier: 167625036
GI number: 167625036
Start: 3810870
End: 3812696
Strand: Reverse
Name: yejM [C]
Synonym: Shal_3124
Alternate gene names: 167625036
Gene position: 3812696-3810870 (Counterclockwise)
Preceding gene: 167625037
Following gene: 167625034
Centisome position: 72.94
GC content: 41.49
Gene sequence:
>1827_bases ATGTTACCTTTGCGCGCACGAATGAAGTCTCACGCGGTGCTAACATTAATAAATGCGTTGATATTTATTATGTTATCTGT GAGTTACTTTGATTACCTTCCCGCTAATCTAACACCTTTAGATTGGGGCTACATTTTCATAGCTACGGCTGGGCAGATGG GGTTGCTTGCTGGACTGCTTGGCTTTGTTAGCTTACCGCTTGGTTTGATTAAATCGACTCTAGTGAGAGTATTATCAACC TCGGCCATTTTTACTATCGCGCTGATAATCTTGTATGGTGATACTCAGGTTTTTGCTCAGTATCGCTTCCATATTCAACC AGTATTGGTTGAAATGATTTTCTCCGGTGGCATAGTCGAATTTTCGGCGGCAAATTATCTGTTTGCCGCGTCGTTAATTA TGCTGGTATTTGCGCTGCAATGTGGGATTTATTGGCTCATATTGACCAGAGGTTGTGACCATCTCAAGCTGACTGGACGA GCTATTGCTTACCTTCTTCTCTTATGTGTGGTTGCCACGCACGCTGTCCATATATGGGCGAGCGCCAATGCAGTGAATTC AATCACCAACTTTAGCTGTTTTTTGCCTCTGTTTTACCCGGCGACAGCCAACAGGTTAATGCTGAAGTATGGTTTAGTGA ATGAAGCAGAGTTAGCTCAGCAAAATAAGTTAAAAATCGATAATCATAGTAATTTATCTTACCCATTAGCGCCGATAACT TATGAACCCGTTACGCCAACTAACATTTTATTTATTGTGATTGATTCTTGGCGTCACGATAGCTTTAGCGCTGAAGTGAC TCCAAATATTTGGCAATACGCTCAAAATGGTCAGGTGTTTAAGCAACATTATTCCACCGGTAATGCGACCCGTGCGGGAA TATTTGGCTTATTTTATGGCTTACCATCCACCTACTGGCATAGCTTTTATCATAATCGCCAATCACCGATAATCATGGAC CGAATACAGCAACTCGATTATCAGTTAGGCATTTTTTCTTCCGCACACTTAATAAAGCCTGAGTTTGATGAAACGGTTTT TGTTCATGTTCCTAATTTAAGAGTGCGTTCAAAAGGTGCGACCAAGCCAAGCCGAGACATTGAGATAACCCAAGAGTGGC TTGAATGGGATAAACATAAAGATCCTACGCGTCCAGCGTTCTCATTTTTGTTTTATGACTCTCCCCATGGATATGATTTT CCAGAGGATTACCCAAATAAATTTGAGCCACAAGTGTCTAGAATGGATTACTTAAATCTAAATAATGATACCGATAGACT GCCTATCCTGAACCGCTATAACACTAGCGTGCACTTTAACGATTCGCTGATAGGCAAAGTCCTCACCCAGCTCAAAGAGT CAGGAGAATTGGCCAACACGTTAGTGGTGGTCACCGGGGACCATGGTCAGGAAATCAACGACAATAAGCTAAACTTTTGG GGCCACAATGGTAACTTTACCGATCCTCAGATAAAAGTGCCTTTTATCATGTTTGGTGCAGATCTTAAGTCCGGGGTTAA TCAATACGTTACTGATCATATGGACTTAGTTCCTACGCTGATGCAAACCTACTTAGGTTCCACCAGTCCGGCAGAAAATT ATACGGCAGGCTATAACTTGTTCAAACGAGATCTTGAACGACGAAAATGGCTCATTCTTTCAAGTTACAGTGATTATGCC TTAGTCAATGAAAATAGCATTTTGCATGTTTCTGGCACTCAAGGTGGTTATCAGTATATGGATAGACATAATCATTCTAA AGAAGGTAAGCCTGATTTTCAGCAGCTAAATCAAGCTTATGAGTTGATGAAACGTTACTTGGAGTAG
Upstream 100 bases:
>100_bases ATTGCGAACTGTGTCACGCATTTTGAGTGAATGAGTGGGTAAAATCCGCGATTTTTATGTTTCCCATCACTGTAGGGCGA AACGAACAGGAACGGTGAAA
Downstream 100 bases:
>100_bases TATTCAGTTGCCGCACCAATTTGACCCGATGAATAGGTGCGATTAATTAGTATGGTAAAGGCTGTGATGATTTACAGTGG AAATTAAACCCTTGGCTTCC
Product: sulfatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 608
Protein sequence:
>608_residues MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE
Sequences:
>Translated_608_residues MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE >Mature_608_residues MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLLGFVSLPLGLIKSTLVRVLST SAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVEFSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGR AIAYLLLLCVVATHAVHIWASANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYGLPSTYWHSFYHNRQSPIIMD RIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGATKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDF PEDYPNKFEPQVSRMDYLNLNNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNLFKRDLERRKWLILSSYSDYA LVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAYELMKRYLE
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yejM [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=576, Percent_Identity=25.3472222222222, Blast_Score=186, Evalue=5e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 69196; Mature: 69196
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHH GFVSLPLGLIKSTLVRVLSTSAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEE FSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGRAIAYLLLLCVVATHAVHIWA ECHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE SANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT CCCHHHHHCCCCEEEHEECCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCCCCCCCCE YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYG ECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHC LPSTYWHSFYHNRQSPIIMDRIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGA CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEECCCC TKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDFPEDYPNKFEPQVSRMDYLNL CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCEEECC NNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW CCCCCCCCCEECCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEE GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNL ECCCCCCCCEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH FKRDLERRKWLILSSYSDYALVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAY HHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH ELMKRYLE HHHHHHCC >Mature Secondary Structure MLPLRARMKSHAVLTLINALIFIMLSVSYFDYLPANLTPLDWGYIFIATAGQMGLLAGLL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHH GFVSLPLGLIKSTLVRVLSTSAIFTIALIILYGDTQVFAQYRFHIQPVLVEMIFSGGIVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEE FSAANYLFAASLIMLVFALQCGIYWLILTRGCDHLKLTGRAIAYLLLLCVVATHAVHIWA ECHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE SANAVNSITNFSCFLPLFYPATANRLMLKYGLVNEAELAQQNKLKIDNHSNLSYPLAPIT CCCHHHHHCCCCEEEHEECCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCCCCCCCCE YEPVTPTNILFIVIDSWRHDSFSAEVTPNIWQYAQNGQVFKQHYSTGNATRAGIFGLFYG ECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHC LPSTYWHSFYHNRQSPIIMDRIQQLDYQLGIFSSAHLIKPEFDETVFVHVPNLRVRSKGA CCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCEEEECCCC TKPSRDIEITQEWLEWDKHKDPTRPAFSFLFYDSPHGYDFPEDYPNKFEPQVSRMDYLNL CCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCEEECC NNDTDRLPILNRYNTSVHFNDSLIGKVLTQLKESGELANTLVVVTGDHGQEINDNKLNFW CCCCCCCCCEECCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCEEEE GHNGNFTDPQIKVPFIMFGADLKSGVNQYVTDHMDLVPTLMQTYLGSTSPAENYTAGYNL ECCCCCCCCEEEECEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH FKRDLERRKWLILSSYSDYALVNENSILHVSGTQGGYQYMDRHNHSKEGKPDFQQLNQAY HHHHHHHCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH ELMKRYLE HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]