Click here to switch to the map view.

The map label for this gene is psrC [H]

Identifier: 167625037

GI number: 167625037

Start: 3812968

End: 3813915

Strand: Reverse

Name: psrC [H]

Synonym: Shal_3125

Alternate gene names: 167625037

Gene position: 3813915-3812968 (Counterclockwise)

Preceding gene: 167625038

Following gene: 167625036

Centisome position: 72.97

GC content: 48.73

Gene sequence:

>948_bases
ATGAACAATATCTGGGGCTCGATGGAGCAATACGATCCGGTAGTGTGGAACTGGATCATCGCGGTGTACTTGTTTATGGC
TGGCCTGTCAGCTGGCTCAATGTTGGTGGCCATAGGGCTTAAGTGGTATAAGCAGAGTCGTGGCTTACCGACGGAAGGTT
TGCCAGTGATTAAGGCGGCTGCGGTGATAGGTCCAGTAGCCATCTGCTTGGGTATGGCACTGCTGGTATTGGATTTGACG
AAACCCTTTGAGTTTTATCATATCCTGCTCAACTACAACCTAACGTCTGTGATGGCATGGGGCGTTATCGCCCTGCTGAT
TTATATTCCGTTAGTGTTTGTGTTTGCGGCGCTGGTATTTGAAAAACAGGTTCTGCATTATGCGCCTTGGCTCGCAGGTG
TACTTAAGGTATGCCGTCAGGTAGAAAATACGCTTAATAAGCTTATTTTTGCTCTGGGTCTAGGTGTCGGCGTGTACACT
GGTTTCTTACTTTCGGCGATGATCAGTTATCCGATTTTGAACACTGCAGTATTGCCTGCACTGTTTTTAGCCTCTGCAAT
GTCTGTTGGCTCTGCGGGTAACATCTTAGTGGCGACTCTGTTCTTCAGTAAGAAAGAGTCAGATTGTATCGAGCAGGTTC
ACCGTATCGAATATCCTGTGGCCTTTAATGAAGCCTTATGCCTAGTGTTGCTGTTTGTTGGCTTAAACTTCTCAGGTCCT
GCGGCGCAGGCCGCAACGGCGGCAATTACCACAGGTACTTGGGCGAGCGTATTCTGGATCGGTGTCGTGGGCTTAGGTCT
CGTGGTACCAGTACTTGCCAGTACCTTGGCTCCAAAAGCGTGGCGTCATAGCAAAGGCTTCTTAATCACAGTATCTTGTA
GCACCATTTTAGGGGTGCTAGCACTGAGACACTTCGTGGTTTACGCAGGGCAGAGCTATATCAGCTAA

Upstream 100 bases:

>100_bases
GTAAAGTGTTAGATACAAAACCTCACTACCAACAAAAGGTAAACCTTGGCACAGAGCCTCGAGTCTACCGCATTCCTAGC
CGTAAAGGAGGGATCAAAGC

Downstream 100 bases:

>100_bases
TCGCTAGCGGTTTTATATCTAAGTGTTAATCATTAATAGCGGCCCTTTTGGGCCGCTATTATTTTTAGAGGAATTCTTGG
TTCGTTGCTCAAAGGGGCTC

Product: polysulfide reductase NrfD

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: Sulfur reductase chain C [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNNIWGSMEQYDPVVWNWIIAVYLFMAGLSAGSMLVAIGLKWYKQSRGLPTEGLPVIKAAAVIGPVAICLGMALLVLDLT
KPFEFYHILLNYNLTSVMAWGVIALLIYIPLVFVFAALVFEKQVLHYAPWLAGVLKVCRQVENTLNKLIFALGLGVGVYT
GFLLSAMISYPILNTAVLPALFLASAMSVGSAGNILVATLFFSKKESDCIEQVHRIEYPVAFNEALCLVLLFVGLNFSGP
AAQAATAAITTGTWASVFWIGVVGLGLVVPVLASTLAPKAWRHSKGFLITVSCSTILGVLALRHFVVYAGQSYIS

Sequences:

>Translated_315_residues
MNNIWGSMEQYDPVVWNWIIAVYLFMAGLSAGSMLVAIGLKWYKQSRGLPTEGLPVIKAAAVIGPVAICLGMALLVLDLT
KPFEFYHILLNYNLTSVMAWGVIALLIYIPLVFVFAALVFEKQVLHYAPWLAGVLKVCRQVENTLNKLIFALGLGVGVYT
GFLLSAMISYPILNTAVLPALFLASAMSVGSAGNILVATLFFSKKESDCIEQVHRIEYPVAFNEALCLVLLFVGLNFSGP
AAQAATAAITTGTWASVFWIGVVGLGLVVPVLASTLAPKAWRHSKGFLITVSCSTILGVLALRHFVVYAGQSYIS
>Mature_315_residues
MNNIWGSMEQYDPVVWNWIIAVYLFMAGLSAGSMLVAIGLKWYKQSRGLPTEGLPVIKAAAVIGPVAICLGMALLVLDLT
KPFEFYHILLNYNLTSVMAWGVIALLIYIPLVFVFAALVFEKQVLHYAPWLAGVLKVCRQVENTLNKLIFALGLGVGVYT
GFLLSAMISYPILNTAVLPALFLASAMSVGSAGNILVATLFFSKKESDCIEQVHRIEYPVAFNEALCLVLLFVGLNFSGP
AAQAATAAITTGTWASVFWIGVVGLGLVVPVLASTLAPKAWRHSKGFLITVSCSTILGVLALRHFVVYAGQSYIS

Specific function: Component of the phosphorylative electron transport system with polysulfide as the terminal acceptor [H]

COG id: COG3301

COG function: function code P; Formate-dependent nitrite reductase, membrane component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI1790509, Length=313, Percent_Identity=38.3386581469649, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 33995; Mature: 33995

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIWGSMEQYDPVVWNWIIAVYLFMAGLSAGSMLVAIGLKWYKQSRGLPTEGLPVIKAA
CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
AVIGPVAICLGMALLVLDLTKPFEFYHILLNYNLTSVMAWGVIALLIYIPLVFVFAALVF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKQVLHYAPWLAGVLKVCRQVENTLNKLIFALGLGVGVYTGFLLSAMISYPILNTAVLPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLASAMSVGSAGNILVATLFFSKKESDCIEQVHRIEYPVAFNEALCLVLLFVGLNFSGP
HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
AAQAATAAITTGTWASVFWIGVVGLGLVVPVLASTLAPKAWRHSKGFLITVSCSTILGVL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEHHHHHHHH
ALRHFVVYAGQSYIS
HHHHHHHHHCHHHCC
>Mature Secondary Structure
MNNIWGSMEQYDPVVWNWIIAVYLFMAGLSAGSMLVAIGLKWYKQSRGLPTEGLPVIKAA
CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
AVIGPVAICLGMALLVLDLTKPFEFYHILLNYNLTSVMAWGVIALLIYIPLVFVFAALVF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKQVLHYAPWLAGVLKVCRQVENTLNKLIFALGLGVGVYTGFLLSAMISYPILNTAVLPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLASAMSVGSAGNILVATLFFSKKESDCIEQVHRIEYPVAFNEALCLVLLFVGLNFSGP
HHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
AAQAATAAITTGTWASVFWIGVVGLGLVVPVLASTLAPKAWRHSKGFLITVSCSTILGVL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEHHHHHHHH
ALRHFVVYAGQSYIS
HHHHHHHHHCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1597189; 14500908 [H]