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The map label for this gene is yjkA [H]

Identifier: 167624945

GI number: 167624945

Start: 3699487

End: 3700257

Strand: Reverse

Name: yjkA [H]

Synonym: Shal_3032

Alternate gene names: 167624945

Gene position: 3700257-3699487 (Counterclockwise)

Preceding gene: 167624950

Following gene: 167624943

Centisome position: 70.79

GC content: 48.38

Gene sequence:

>771_bases
ATGGATATAGCTTGGTTGCAGTTAGGCCTATTTATGCTGGTGCTATTGGTTCCTATGGCGATAGGACGATACTTTCAGTT
AGGTCTTAGCCGTGATATGACCTGGGCCGTTGTGCGCATGACGGCGCAACTAGTTTTGGTGGGACTCTATCTGCAATACC
TCTTTTTGCTCGATAATCTCTGGGTAAACCTTGCCTGGTTATTGGTGATGTTACTGGTAGGCTCGAGCGCGATTATTAGT
AAGGCGAAACTACCAAGAAGATTGCTCTACTTTCCAGTGTTTAGTGGTTTAGCACTAGGTTTATTTCCTATTTTGTGGCT
GATGATAGTTTATCTCTTGTCACCGCAGCCACTTTATACCGCGCAATACTTAATTCCCACAGCTGGCATGTTGTTGGGGA
ATTGCTTGAGCGGCAACATAATTGCGTTGCAGCGACTATTTGGTGCCTTTAATGATAGAAAACATGAATACCAAGGGGCG
CTGGCGCTGGGGGCATCGCCGAGTCAGGCGAGTCTGCCATTTGTACAGAGTGCGATGCAGCAATCTTTTGCGCCAATTCT
GGCCTCAATGGCGACAATGGGGCTGGTTACCTTGCCTGGAATGATGACAGGACAGATCTTGGGCGGCGTCGATCCGCTGA
TCGCCATCAAGTATCAGCTGGTGATCTCGGTGGCGATTTTCGTGACCCTCTCGGTTTCAGTGTCGACCACTTTAGTGCTT
TGTATTCGCTCAGCAATCAGTGAGACTGGACGAGTGCGAATTAGCCTTTGA

Upstream 100 bases:

>100_bases
TCATTATTAAGACTGATGTCACTGAATGCGGCGCTATTAAGCGAGTCATAGTTTAGTTATATTAGTGTTCAAGTTTTTGT
TGCTTAAGAGATAAGTCTGA

Downstream 100 bases:

>100_bases
TTAAGCGAAGATAATTGAAGCTCTGAAACTCAATTTTGGCAGTGCTGGATTGATGTGAGAAAGATGAAATAACACGCAAA
AAATAAAATGGCTGCACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDIAWLQLGLFMLVLLVPMAIGRYFQLGLSRDMTWAVVRMTAQLVLVGLYLQYLFLLDNLWVNLAWLLVMLLVGSSAIIS
KAKLPRRLLYFPVFSGLALGLFPILWLMIVYLLSPQPLYTAQYLIPTAGMLLGNCLSGNIIALQRLFGAFNDRKHEYQGA
LALGASPSQASLPFVQSAMQQSFAPILASMATMGLVTLPGMMTGQILGGVDPLIAIKYQLVISVAIFVTLSVSVSTTLVL
CIRSAISETGRVRISL

Sequences:

>Translated_256_residues
MDIAWLQLGLFMLVLLVPMAIGRYFQLGLSRDMTWAVVRMTAQLVLVGLYLQYLFLLDNLWVNLAWLLVMLLVGSSAIIS
KAKLPRRLLYFPVFSGLALGLFPILWLMIVYLLSPQPLYTAQYLIPTAGMLLGNCLSGNIIALQRLFGAFNDRKHEYQGA
LALGASPSQASLPFVQSAMQQSFAPILASMATMGLVTLPGMMTGQILGGVDPLIAIKYQLVISVAIFVTLSVSVSTTLVL
CIRSAISETGRVRISL
>Mature_256_residues
MDIAWLQLGLFMLVLLVPMAIGRYFQLGLSRDMTWAVVRMTAQLVLVGLYLQYLFLLDNLWVNLAWLLVMLLVGSSAIIS
KAKLPRRLLYFPVFSGLALGLFPILWLMIVYLLSPQPLYTAQYLIPTAGMLLGNCLSGNIIALQRLFGAFNDRKHEYQGA
LALGASPSQASLPFVQSAMQQSFAPILASMATMGLVTLPGMMTGQILGGVDPLIAIKYQLVISVAIFVTLSVSVSTTLVL
CIRSAISETGRVRISL

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=240, Percent_Identity=30, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27986; Mature: 27986

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCEEEEC
>Mature Secondary Structure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HHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]