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The map label for this gene is syd

Identifier: 167624912

GI number: 167624912

Start: 3640753

End: 3641394

Strand: Reverse

Name: syd

Synonym: Shal_2998

Alternate gene names: 167624912

Gene position: 3641394-3640753 (Counterclockwise)

Preceding gene: 167624914

Following gene: 167624909

Centisome position: 69.67

GC content: 44.24

Gene sequence:

>642_bases
GTGTCTTCTTTACCCGCTTTAGATCTTTTTTTATCTAAATATCAACAAGCCTATGTAGAAAAGCTTGATGAACAGCCACG
ATATTATGCCCAAGAGCAAGAGTCTGACTGCGTTGTAGGCGAAATGGATAGTGACGGAGCCGTGTTTTGGCAAGCGGTTG
TTCGTCAAACTCCTGGTCAGTTTGATAACGTCGAAACTGCGCTTGAACTGACTCTGTGTGCTGAAATAAATGCATTTTAT
GGCCGTCACTTCTCCGCGCCGCTATTCTTTGACTCCAAGTGGGGCAGCGGTGAACTTATCCAAGTGTGGAACCAAACCGA
TTTTGAGTACCTGCAGCAGAACATCATCGGTCATTTGATGATGAAGAAAAAGCTTAAGCAGGAGCCAACTTGGTTTATCG
GTGTGTTAGACGATGAAGATAAGATGCTAACAGTTAATAATAGCGACGGCAGTGTGTGGGTTGAGATCCCTGGCGAAGTT
CAAAGCAGTAAGCTTGCAGAGTCGTTGAATGAATTTATTAGCTTATTAACGCCAAGAGTGACACCACCGGTAAAGTTGAT
TGAAGAGTCTATGCCTGAGCTTGATCACCCCGGTATTTGGCAGCGAATGAAATTGATGTGGCGTAATTTACGCGGCAAAT
AA

Upstream 100 bases:

>100_bases
AGTTCGGGTGCGTTACTGTAGGGATCATGATGTTGTGTCATCAATACGGTTTCCATGTCAAAATAGACCCCTATTATAAC
TGATTTTGGAACTGGCTTAA

Downstream 100 bases:

>100_bases
TTGATGCGCTAGATGCGATAACAAAAATGGCTCAATATTCATTGAGCCATTTTTTATGAGGACGCGATTTTATGGGGAAG
ATATAGTTTCTTATAGATGA

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSSLPALDLFLSKYQQAYVEKLDEQPRYYAQEQESDCVVGEMDSDGAVFWQAVVRQTPGQFDNVETALELTLCAEINAFY
GRHFSAPLFFDSKWGSGELIQVWNQTDFEYLQQNIIGHLMMKKKLKQEPTWFIGVLDDEDKMLTVNNSDGSVWVEIPGEV
QSSKLAESLNEFISLLTPRVTPPVKLIEESMPELDHPGIWQRMKLMWRNLRGK

Sequences:

>Translated_213_residues
MSSLPALDLFLSKYQQAYVEKLDEQPRYYAQEQESDCVVGEMDSDGAVFWQAVVRQTPGQFDNVETALELTLCAEINAFY
GRHFSAPLFFDSKWGSGELIQVWNQTDFEYLQQNIIGHLMMKKKLKQEPTWFIGVLDDEDKMLTVNNSDGSVWVEIPGEV
QSSKLAESLNEFISLLTPRVTPPVKLIEESMPELDHPGIWQRMKLMWRNLRGK
>Mature_212_residues
SSLPALDLFLSKYQQAYVEKLDEQPRYYAQEQESDCVVGEMDSDGAVFWQAVVRQTPGQFDNVETALELTLCAEINAFYG
RHFSAPLFFDSKWGSGELIQVWNQTDFEYLQQNIIGHLMMKKKLKQEPTWFIGVLDDEDKMLTVNNSDGSVWVEIPGEVQ
SSKLAESLNEFISLLTPRVTPPVKLIEESMPELDHPGIWQRMKLMWRNLRGK

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=147, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_SHEHH (B0TPA0)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001675206.1
- GeneID:   5904244
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_2998
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- BioCyc:   SHAL458817:SHAL_2998-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 24542; Mature: 24411

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLPALDLFLSKYQQAYVEKLDEQPRYYAQEQESDCVVGEMDSDGAVFWQAVVRQTPGQ
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCC
FDNVETALELTLCAEINAFYGRHFSAPLFFDSKWGSGELIQVWNQTDFEYLQQNIIGHLM
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHH
MKKKLKQEPTWFIGVLDDEDKMLTVNNSDGSVWVEIPGEVQSSKLAESLNEFISLLTPRV
HHHHHHCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
TPPVKLIEESMPELDHPGIWQRMKLMWRNLRGK
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSLPALDLFLSKYQQAYVEKLDEQPRYYAQEQESDCVVGEMDSDGAVFWQAVVRQTPGQ
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCC
FDNVETALELTLCAEINAFYGRHFSAPLFFDSKWGSGELIQVWNQTDFEYLQQNIIGHLM
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHH
MKKKLKQEPTWFIGVLDDEDKMLTVNNSDGSVWVEIPGEVQSSKLAESLNEFISLLTPRV
HHHHHHCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
TPPVKLIEESMPELDHPGIWQRMKLMWRNLRGK
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA