Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167624909

Identifier: 167624909

GI number: 167624909

Start: 3639003

End: 3639395

Strand: Reverse

Name: 167624909

Synonym: Shal_2995

Alternate gene names: NA

Gene position: 3639395-3639003 (Counterclockwise)

Preceding gene: 167624912

Following gene: 167624907

Centisome position: 69.63

GC content: 42.24

Gene sequence:

>393_bases
ATGTTAATACAGGAAGTTAAAGTGAAAACAAAATTATTAGGTTTAGCGTTTTTTGGGATTGCAAGCTTAGGGCTAACGGG
CTGTGTGGTCAATCTCGGTGATGGCGAATCGGATTGGGATAGTAATGGGTCATGGGAAAAAGTTCAGGATAAAAACCGCG
ATAACTTATCAAAAATCTCCTTGGGTATGTCTAAGGACCAAGTCGTAACCCTAATGGGGACAGCCGATTTTAATGAGGCC
TATATCCAACAAGATAAAGACGTTTATGTTCTTTTTTATCGCACACAACGGACCCACAGCGACGGTAAAACCACCAAAGA
TGAATGTACTCCAGTAGTGATCAGTAATAACGCGGTCGTTGGTTGGGGGGAGGTGGCTTACAGTAAGATCTAA

Upstream 100 bases:

>100_bases
TCGCAGCATAATACCCAAGGTCTTCTTTAAAATAAACACATGTAAAAACAGTAGCTTGGTGCTTGGCATGTTAATTGCTT
TTTAAATAAAACTAAAAACA

Downstream 100 bases:

>100_bases
CCTTAAAACCAAAACTAAGCCTAAGGCTTTCTCAACAGGGTGTCCAGATGGTCGATAACTTCAGACCACTGGGCATCTTG
ATTAAAAGACTCCACTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA
YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI

Sequences:

>Translated_130_residues
MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA
YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI
>Mature_130_residues
MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKISLGMSKDQVVTLMGTADFNEA
YIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVVGWGEVAYSKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14342; Mature: 14342

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKIS
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEE
LGMSKDQVVTLMGTADFNEAYIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVV
CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCEEE
GWGEVAYSKI
ECCHHEEECC
>Mature Secondary Structure
MLIQEVKVKTKLLGLAFFGIASLGLTGCVVNLGDGESDWDSNGSWEKVQDKNRDNLSKIS
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEE
LGMSKDQVVTLMGTADFNEAYIQQDKDVYVLFYRTQRTHSDGKTTKDECTPVVISNNAVV
CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCEEE
GWGEVAYSKI
ECCHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA