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The map label for this gene is ynfI [C]

Identifier: 167624838

GI number: 167624838

Start: 3554396

End: 3555136

Strand: Reverse

Name: ynfI [C]

Synonym: Shal_2924

Alternate gene names: 167624838

Gene position: 3555136-3554396 (Counterclockwise)

Preceding gene: 167624839

Following gene: 167624836

Centisome position: 68.02

GC content: 45.88

Gene sequence:

>741_bases
ATGTCTTCAAAAACAGACTCGCTCACGCAATCATCGCTTGCTCAATTAAGCCCTGCTCAGTCATCTTTAAGCAAAATTGA
TTTTGTTGAGTATCAAGGGTTAGCGCGAATACTGCATCACTGCCTTATTCGTTACCCAGAAGCCGATTTTATTAATGGGC
TAAAAGAGTGCGATGTGGCGGGCAGTTGGCCTGAGTTTGAACATCGCCTAGAAAATAGCACTGGGCGCAAATTGCTGGGA
GCTTTTCTACAGCAATGGTCGAGTGAGGTGAGCGCGGCGGATGCAGAAAAGGCATTAATTACCTTAAAGCTAGATTACGG
CCAACTTTTCTTTGGACCAGGCGAACCGACAGCTGTGCCGCAAGGCTCAGTTTACCTGTGCGAAGAGCAGTTGATTAACG
ATAGAACTACCGTTGAGTTGATGGACTACTATCGCGCTCACGGTGTTGAGTTGCAACTCGATTACAAGCAACCCATTGAC
CATATTGGTTTGTTCTTTACTGTACTGGATCAAACCTTTGGTCGCCTGCAATCAGAAGTCGATAACCAAGCTTTGATCCG
CTTTACTCAAGTGCTTTTGCAACAACACCTATTGCCTTGGGCAATGCGTTGCTGTCAATTAGCCAATGAGCACGCCAAGA
CCGATTTTTATCGTGGTATTGCTTTGCTAACCACAGACTTCTTGTTGCAACTGCAGCAAGATTTTCAGGTGTTGCCGCTT
GATAAACGACTGTTTCGCTAG

Upstream 100 bases:

>100_bases
CCCAACTGAAGTATAACTTCAGCTAAAGGTTAAGTATTAAGGTCTTTAAATAGTGCAACAGCAGCGGGCTTGATAGCCCG
CTTAGCTTGTAAGGTAAATT

Downstream 100 bases:

>100_bases
TCTAGCTTAGTGCATTGATACGTTCCTAAGTGACCGATAATAGCAAAAAGCCCGCAAATGAAAGTTTGCGGGCTTTTTAT
TTGCGCAGTCAAAGTGAAAG

Product: cytoplasmic chaperone TorD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSSKTDSLTQSSLAQLSPAQSSLSKIDFVEYQGLARILHHCLIRYPEADFINGLKECDVAGSWPEFEHRLENSTGRKLLG
AFLQQWSSEVSAADAEKALITLKLDYGQLFFGPGEPTAVPQGSVYLCEEQLINDRTTVELMDYYRAHGVELQLDYKQPID
HIGLFFTVLDQTFGRLQSEVDNQALIRFTQVLLQQHLLPWAMRCCQLANEHAKTDFYRGIALLTTDFLLQLQQDFQVLPL
DKRLFR

Sequences:

>Translated_246_residues
MSSKTDSLTQSSLAQLSPAQSSLSKIDFVEYQGLARILHHCLIRYPEADFINGLKECDVAGSWPEFEHRLENSTGRKLLG
AFLQQWSSEVSAADAEKALITLKLDYGQLFFGPGEPTAVPQGSVYLCEEQLINDRTTVELMDYYRAHGVELQLDYKQPID
HIGLFFTVLDQTFGRLQSEVDNQALIRFTQVLLQQHLLPWAMRCCQLANEHAKTDFYRGIALLTTDFLLQLQQDFQVLPL
DKRLFR
>Mature_245_residues
SSKTDSLTQSSLAQLSPAQSSLSKIDFVEYQGLARILHHCLIRYPEADFINGLKECDVAGSWPEFEHRLENSTGRKLLGA
FLQQWSSEVSAADAEKALITLKLDYGQLFFGPGEPTAVPQGSVYLCEEQLINDRTTVELMDYYRAHGVELQLDYKQPIDH
IGLFFTVLDQTFGRLQSEVDNQALIRFTQVLLQQHLLPWAMRCCQLANEHAKTDFYRGIALLTTDFLLQLQQDFQVLPLD
KRLFR

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 28061; Mature: 27930

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKTDSLTQSSLAQLSPAQSSLSKIDFVEYQGLARILHHCLIRYPEADFINGLKECDVA
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
GSWPEFEHRLENSTGRKLLGAFLQQWSSEVSAADAEKALITLKLDYGQLFFGPGEPTAVP
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCC
QGSVYLCEEQLINDRTTVELMDYYRAHGVELQLDYKQPIDHIGLFFTVLDQTFGRLQSEV
CCCEEEEHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
DNQALIRFTQVLLQQHLLPWAMRCCQLANEHAKTDFYRGIALLTTDFLLQLQQDFQVLPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKRLFR
HHHHCC
>Mature Secondary Structure 
SSKTDSLTQSSLAQLSPAQSSLSKIDFVEYQGLARILHHCLIRYPEADFINGLKECDVA
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
GSWPEFEHRLENSTGRKLLGAFLQQWSSEVSAADAEKALITLKLDYGQLFFGPGEPTAVP
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCC
QGSVYLCEEQLINDRTTVELMDYYRAHGVELQLDYKQPIDHIGLFFTVLDQTFGRLQSEV
CCCEEEEHHHHHCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
DNQALIRFTQVLLQQHLLPWAMRCCQLANEHAKTDFYRGIALLTTDFLLQLQQDFQVLPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKRLFR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]