Click here to switch to the map view.

The map label for this gene is yoaB [H]

Identifier: 167624836

GI number: 167624836

Start: 3553267

End: 3553614

Strand: Reverse

Name: yoaB [H]

Synonym: Shal_2922

Alternate gene names: 167624836

Gene position: 3553614-3553267 (Counterclockwise)

Preceding gene: 167624838

Following gene: 167624834

Centisome position: 67.99

GC content: 47.99

Gene sequence:

>348_bases
ATGGATATTCAACGCGTTAACCCATGTGCAAATTGGTCCGATGCTACCGTGTTCAATAACATGGCACACTTTGTTGAAAT
TGCAGCTGATGTCGACGGCGATATGCAAAGTCAAACTGCGCAGATTTTTGAGCAGGCCGAAGCGACATTAGCCAGTGTAG
GCAGTGATAAGTCTCGTCTATTATCGGTCACTATTTACGTTACCGATTTTGCAAACGTGGCGGTATTTAATCAGGCGTGG
CAAGCGTGGCTGCCTGAAGGCTGCGCCCCGAGTCGCGCCTGCTTAAAAGTCGAGTTAGCCGATCCTGCATATTTAGTAGA
AATAGCCTTTGTGGCGGCGGTTAAGTAA

Upstream 100 bases:

>100_bases
CTTAGCGCTGCATAATCGACTTAAGGCACTAAATTTACTAGGTCTGTGGTACATTTCTGCTAAAATCGCCTGCTACTATG
ATGAATTTTTAAGGTTTAAA

Downstream 100 bases:

>100_bases
AGTCTTAGTGACTTATTCTAGATGTTGATTCAGTTTAAGCGTTGAGTGGAGCAGAGCATTCACTCAGCCAAGCTTAGACT
CAATCTAGCTGCTTGAGCAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MDIQRVNPCANWSDATVFNNMAHFVEIAADVDGDMQSQTAQIFEQAEATLASVGSDKSRLLSVTIYVTDFANVAVFNQAW
QAWLPEGCAPSRACLKVELADPAYLVEIAFVAAVK

Sequences:

>Translated_115_residues
MDIQRVNPCANWSDATVFNNMAHFVEIAADVDGDMQSQTAQIFEQAEATLASVGSDKSRLLSVTIYVTDFANVAVFNQAW
QAWLPEGCAPSRACLKVELADPAYLVEIAFVAAVK
>Mature_115_residues
MDIQRVNPCANWSDATVFNNMAHFVEIAADVDGDMQSQTAQIFEQAEATLASVGSDKSRLLSVTIYVTDFANVAVFNQAW
QAWLPEGCAPSRACLKVELADPAYLVEIAFVAAVK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=39.4736842105263, Blast_Score=89, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12499; Mature: 12499

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIQRVNPCANWSDATVFNNMAHFVEIAADVDGDMQSQTAQIFEQAEATLASVGSDKSRL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LSVTIYVTDFANVAVFNQAWQAWLPEGCAPSRACLKVELADPAYLVEIAFVAAVK
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MDIQRVNPCANWSDATVFNNMAHFVEIAADVDGDMQSQTAQIFEQAEATLASVGSDKSRL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
LSVTIYVTDFANVAVFNQAWQAWLPEGCAPSRACLKVELADPAYLVEIAFVAAVK
EEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]