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The map label for this gene is nrfA [H]

Identifier: 167624834

GI number: 167624834

Start: 3550898

End: 3552280

Strand: Reverse

Name: nrfA [H]

Synonym: Shal_2920

Alternate gene names: 167624834

Gene position: 3552280-3550898 (Counterclockwise)

Preceding gene: 167624836

Following gene: 167624832

Centisome position: 67.96

GC content: 45.48

Gene sequence:

>1383_bases
ATGAAAGCATACCAAGTGCCCTTGATAGCTGGCGTCTGTTTAGGCATGGTAAGCACTGGCGTGGTGGCAAACACCAATCC
AGCAGATAATGCTCAATATGAGAAGCGTTTTCCAAAACAGTATCAAAGTTGGGAAAAAACCGCAGAGAGTAAAGAGGCGA
CAAATTTACTCTCTGCGGATCCTAATTTAGTTATTCTCTGGGCTGGTTATGGATTTGCCAAGGATTATAAAGCTCCAAGA
GGTCACCAATATGCTATTACTGATGTGAGGAGTACATTACGAACTGGCGCCCCCATGACGGCAGATGAAGGGCCTATGCC
TATGGCCTGTTGGAGTTGTAAGAGCCCTGATGTGCCACGATTGATTGAGGAAGAGGGGGAAACTGGGTACTTCAAAGGTA
AATGGGCCAAGGGAGGTCCAGAGATTGTTAATAATATAGGATGTGCAGACTGCCATGAACCTGGCACCTCAAAATTAAGG
ATCGCACGTCCATTTGCTGAGCGTGCTTTTGCTGCAATTGGAACGCCGTTTGATGAGGCTGAGAAGAGCCAGAAACAAAA
CATGGTATGTGGGCAGTGCCATGTGGAATATTACTTTGAAAAAACAGCAGAACATCCTAATTGGGTTAAATTCCCTTGGG
ATGATGGTACGACAGTCGAAGATATGGAAGCTTATTACGATAAGATTAACTTTACAGATTGGACACATCAAATATCAAAA
GCGCCAATGTTAAAAGCCCAGCATCCAGGTTATGAGACTACTGCACAGGGAATTCATGGTGAGATGGGAATATCATGTAC
CGATTGTCATATGCCGCGGGTAACCAATGCAGAGGGTAAAGAATACACTGACCATAATATCGGTAGTCCGTTTGATAAAT
TTGAATATACCTGCGCAACTTGCCACGAACAGACCAAAGAGCAGTTACAAAGCTTAGTTCAAGCCAATAAAGACAAGATT
AATGCACTTAAGCTAAAGGCTGAAGACACTTTGGTGAAAGCTCATTTCGAGGCTGGTGCCGCTTGGAAAGCGGGGGCAAC
CGAGCAGCAGATGGCTGCAGCGTTAACGGATATCCGTCATGCTCAATGGCGTTGGGACTATGCCATCGCCTCGCACGGCA
TAGCCGCTCACGCGCCAGAAGAGGGTCTTCGTATTTTAGAAACCTCATTAGTTAAGTCGACAGAAGCTCGTGATAAGTTA
GCAAAAATATTAGCAGCTCAAGGTGTTAATACCGCTGTGGTTATTCCAGATATTTCGACCGAAGCGAAAGCACAGGCCGT
CTTAGGCATGGATATGAAAAAGATGCGCACCGATAAGGCCACCTTTATCGAGAAAGTCGTGCCAAAGTGGGAAGCGGAAT
ATAAGGTCACTAATGGTGAGTAG

Upstream 100 bases:

>100_bases
ATTAACAAGTCTACTTATGAACCCCATTAAAAATGGGGGGATTACAACATGTCACGACCACATTTTACTGCATATAACCA
AAAACTAAGGATAATACACT

Downstream 100 bases:

>100_bases
ATTTTAATTGTTATTACGCTATAAAGTCCGGGAATTTAGCTTCCCGGATTTTTTATGTCATGATTATTCTTTATTTATAT
ACCGCTATCAGTGCACTCAG

Product: nitrite reductase

Products: NA

Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKAYQVPLIAGVCLGMVSTGVVANTNPADNAQYEKRFPKQYQSWEKTAESKEATNLLSADPNLVILWAGYGFAKDYKAPR
GHQYAITDVRSTLRTGAPMTADEGPMPMACWSCKSPDVPRLIEEEGETGYFKGKWAKGGPEIVNNIGCADCHEPGTSKLR
IARPFAERAFAAIGTPFDEAEKSQKQNMVCGQCHVEYYFEKTAEHPNWVKFPWDDGTTVEDMEAYYDKINFTDWTHQISK
APMLKAQHPGYETTAQGIHGEMGISCTDCHMPRVTNAEGKEYTDHNIGSPFDKFEYTCATCHEQTKEQLQSLVQANKDKI
NALKLKAEDTLVKAHFEAGAAWKAGATEQQMAAALTDIRHAQWRWDYAIASHGIAAHAPEEGLRILETSLVKSTEARDKL
AKILAAQGVNTAVVIPDISTEAKAQAVLGMDMKKMRTDKATFIEKVVPKWEAEYKVTNGE

Sequences:

>Translated_460_residues
MKAYQVPLIAGVCLGMVSTGVVANTNPADNAQYEKRFPKQYQSWEKTAESKEATNLLSADPNLVILWAGYGFAKDYKAPR
GHQYAITDVRSTLRTGAPMTADEGPMPMACWSCKSPDVPRLIEEEGETGYFKGKWAKGGPEIVNNIGCADCHEPGTSKLR
IARPFAERAFAAIGTPFDEAEKSQKQNMVCGQCHVEYYFEKTAEHPNWVKFPWDDGTTVEDMEAYYDKINFTDWTHQISK
APMLKAQHPGYETTAQGIHGEMGISCTDCHMPRVTNAEGKEYTDHNIGSPFDKFEYTCATCHEQTKEQLQSLVQANKDKI
NALKLKAEDTLVKAHFEAGAAWKAGATEQQMAAALTDIRHAQWRWDYAIASHGIAAHAPEEGLRILETSLVKSTEARDKL
AKILAAQGVNTAVVIPDISTEAKAQAVLGMDMKKMRTDKATFIEKVVPKWEAEYKVTNGE
>Mature_460_residues
MKAYQVPLIAGVCLGMVSTGVVANTNPADNAQYEKRFPKQYQSWEKTAESKEATNLLSADPNLVILWAGYGFAKDYKAPR
GHQYAITDVRSTLRTGAPMTADEGPMPMACWSCKSPDVPRLIEEEGETGYFKGKWAKGGPEIVNNIGCADCHEPGTSKLR
IARPFAERAFAAIGTPFDEAEKSQKQNMVCGQCHVEYYFEKTAEHPNWVKFPWDDGTTVEDMEAYYDKINFTDWTHQISK
APMLKAQHPGYETTAQGIHGEMGISCTDCHMPRVTNAEGKEYTDHNIGSPFDKFEYTCATCHEQTKEQLQSLVQANKDKI
NALKLKAEDTLVKAHFEAGAAWKAGATEQQMAAALTDIRHAQWRWDYAIASHGIAAHAPEEGLRILETSLVKSTEARDKL
AKILAAQGVNTAVVIPDISTEAKAQAVLGMDMKKMRTDKATFIEKVVPKWEAEYKVTNGE

Specific function: Plays a role in nitrite reduction [H]

COG id: COG3303

COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c-552 family [H]

Homologues:

Organism=Escherichia coli, GI1790506, Length=438, Percent_Identity=58.2191780821918, Blast_Score=550, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003321
- InterPro:   IPR017570
- InterPro:   IPR011031 [H]

Pfam domain/function: PF02335 Cytochrom_C552 [H]

EC number: =1.7.2.2 [H]

Molecular weight: Translated: 50997; Mature: 50997

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAYQVPLIAGVCLGMVSTGVVANTNPADNAQYEKRFPKQYQSWEKTAESKEATNLLSAD
CCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
PNLVILWAGYGFAKDYKAPRGHQYAITDVRSTLRTGAPMTADEGPMPMACWSCKSPDVPR
CCEEEEECCCCCHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCH
LIEEEGETGYFKGKWAKGGPEIVNNIGCADCHEPGTSKLRIARPFAERAFAAIGTPFDEA
HHHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCHHHH
EKSQKQNMVCGQCHVEYYFEKTAEHPNWVKFPWDDGTTVEDMEAYYDKINFTDWTHQISK
HHHHHHCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHC
APMLKAQHPGYETTAQGIHGEMGISCTDCHMPRVTNAEGKEYTDHNIGSPFDKFEYTCAT
CCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
CHEQTKEQLQSLVQANKDKINALKLKAEDTLVKAHFEAGAAWKAGATEQQMAAALTDIRH
HHHHHHHHHHHHHHCCCCCCEEEEEECCHHEEEEHHCCCCCCCCCCCHHHHHHHHHHHHH
AQWRWDYAIASHGIAAHAPEEGLRILETSLVKSTEARDKLAKILAAQGVNTAVVIPDIST
HHEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
EAKAQAVLGMDMKKMRTDKATFIEKVVPKWEAEYKVTNGE
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC
>Mature Secondary Structure
MKAYQVPLIAGVCLGMVSTGVVANTNPADNAQYEKRFPKQYQSWEKTAESKEATNLLSAD
CCCCCCHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
PNLVILWAGYGFAKDYKAPRGHQYAITDVRSTLRTGAPMTADEGPMPMACWSCKSPDVPR
CCEEEEECCCCCHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCH
LIEEEGETGYFKGKWAKGGPEIVNNIGCADCHEPGTSKLRIARPFAERAFAAIGTPFDEA
HHHCCCCCCEEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCCHHHH
EKSQKQNMVCGQCHVEYYFEKTAEHPNWVKFPWDDGTTVEDMEAYYDKINFTDWTHQISK
HHHHHHCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHC
APMLKAQHPGYETTAQGIHGEMGISCTDCHMPRVTNAEGKEYTDHNIGSPFDKFEYTCAT
CCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
CHEQTKEQLQSLVQANKDKINALKLKAEDTLVKAHFEAGAAWKAGATEQQMAAALTDIRH
HHHHHHHHHHHHHHCCCCCCEEEEEECCHHEEEEHHCCCCCCCCCCCHHHHHHHHHHHHH
AQWRWDYAIASHGIAAHAPEEGLRILETSLVKSTEARDKLAKILAAQGVNTAVVIPDIST
HHEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
EAKAQAVLGMDMKKMRTDKATFIEKVVPKWEAEYKVTNGE
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA