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The map label for this gene is yafC [H]

Identifier: 167624664

GI number: 167624664

Start: 3332616

End: 3333566

Strand: Reverse

Name: yafC [H]

Synonym: Shal_2746

Alternate gene names: 167624664

Gene position: 3333566-3332616 (Counterclockwise)

Preceding gene: 167624667

Following gene: 167624661

Centisome position: 63.78

GC content: 40.17

Gene sequence:

>951_bases
TTGACCAAGGTACTCATTAACAGCGAAGTGTCTATGTTAGATAAAATTGTTTATTTTTTACATGTAGTTAGAACTGGGTC
TTTTAGTGATGCAGCGAAGCAGTATGGTATATCAGCCTCTGCAGGGAGTCGCTGGATCATTGAGTTAGAGGAAAACATGG
GGGTGAGCCTGCTTAAACGCTCAACTCGTAAAGTTGTTCCGACTCAGGCAGGAGAGCGATTATTCGACCGATTCTGCCAT
GTGAACACTGAAATTGATGACATTCTCACAGAGATTCAAAATTTAGGAAATGATGATCGGGGAGTCATTCGTATTGCCAG
CACCCCTCTGTTTGCTAAAAAATTCTTGAGCCAAGTCGTTGGAGAATACTTGTGTGAATACCCCTATGTGTCTTTTAAGA
TTGTTGAAACCGCTTATGAGATGGATCATGTCGGCGAAGTTGACTTTGCTATTCGAGCAAATGCGACATATCAAGGTTAT
CAAGAGAAAGATAGCTTGTTGGTTAAACGGTCATTGCTTAGGTACCCGCTTAAGGCTTGTTGTTCACCACGCTACATCGA
ACGTTTTTCTTTGCCTGAAACTCCCGAAGAGCTAAAGAAACATAATTGTTTGTATGCATCGACCTTAGTGGGGGGAAATA
AATGGGTCTTCGAGCGAGGGGGGGAATTTACAACGGTCGAAATAGCCCAAACTGTGCAGGTTGAAGATAGTGAGTTTTTG
AAAACAGTTGCGTTAACTGGCGCTGGAATTGCTTATTTACCCACAAGTTTAATACAAAAAGAATTAAATGATGGTTCATT
AGTCCCTATTTTAGATGATTACAGTAATAGTCATTTTGAGTTTGGACTATATTTCAGACCAAGAAAGCAAATGCCAACTC
GTTGTGTAAATTTTAAAGACTTTTTAATTAGACGGGTAACAGAGATAGCATCTGAATTAGAAGTCAGCTGA

Upstream 100 bases:

>100_bases
AATTGTTGGATATATGAATAATGATAGAAACGCTAGCACTTAATAAGTGACGCTATTTTACGTTTCACATGTTAAGGATG
TGTTTTAACGGGTTGGTTTA

Downstream 100 bases:

>100_bases
TTATTGTTTTTGGTGTGCAAAGCGTAATGTAAATGGCTTTTAAAAAAGATTCAAAGATGAGGTTGGTGAGTTAGTACTTA
GATATTTACCACAACTTAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MTKVLINSEVSMLDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGERLFDRFCH
VNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVVGEYLCEYPYVSFKIVETAYEMDHVGEVDFAIRANATYQGY
QEKDSLLVKRSLLRYPLKACCSPRYIERFSLPETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIAQTVQVEDSEFL
KTVALTGAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKDFLIRRVTEIASELEVS

Sequences:

>Translated_316_residues
MTKVLINSEVSMLDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGERLFDRFCH
VNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVVGEYLCEYPYVSFKIVETAYEMDHVGEVDFAIRANATYQGY
QEKDSLLVKRSLLRYPLKACCSPRYIERFSLPETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIAQTVQVEDSEFL
KTVALTGAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKDFLIRRVTEIASELEVS
>Mature_315_residues
TKVLINSEVSMLDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKRSTRKVVPTQAGERLFDRFCHV
NTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVVGEYLCEYPYVSFKIVETAYEMDHVGEVDFAIRANATYQGYQ
EKDSLLVKRSLLRYPLKACCSPRYIERFSLPETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIAQTVQVEDSEFLK
TVALTGAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKDFLIRRVTEIASELEVS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=34.3434343434343, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=27.9310344827586, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789639, Length=276, Percent_Identity=30.4347826086957, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.125, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=25, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693193, Length=307, Percent_Identity=27.3615635179153, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=25.6849315068493, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=287, Percent_Identity=25.4355400696864, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081978, Length=279, Percent_Identity=22.2222222222222, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.8956228956229, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693105, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=130, Percent_Identity=33.8461538461538, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788748, Length=143, Percent_Identity=32.1678321678322, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=262, Percent_Identity=23.2824427480916, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35881; Mature: 35750

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLINSEVSMLDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKR
CCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHH
STRKVVPTQAGERLFDRFCHVNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVV
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH
GEYLCEYPYVSFKIVETAYEMDHVGEVDFAIRANATYQGYQEKDSLLVKRSLLRYPLKAC
HHHHHCCCCCEEEEHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
CSPRYIERFSLPETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIAQTVQVEDSEFL
CCCHHHHHCCCCCCHHHHHHCCCEEEEEEECCCEEEEECCCCEEEEEEEEEEECCHHHHH
KTVALTGAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKD
HHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCHHHCCHHH
FLIRRVTEIASELEVS
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKVLINSEVSMLDKIVYFLHVVRTGSFSDAAKQYGISASAGSRWIIELEENMGVSLLKR
CEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHH
STRKVVPTQAGERLFDRFCHVNTEIDDILTEIQNLGNDDRGVIRIASTPLFAKKFLSQVV
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH
GEYLCEYPYVSFKIVETAYEMDHVGEVDFAIRANATYQGYQEKDSLLVKRSLLRYPLKAC
HHHHHCCCCCEEEEHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
CSPRYIERFSLPETPEELKKHNCLYASTLVGGNKWVFERGGEFTTVEIAQTVQVEDSEFL
CCCHHHHHCCCCCCHHHHHHCCCEEEEEEECCCEEEEECCCCEEEEEEEEEEECCHHHHH
KTVALTGAGIAYLPTSLIQKELNDGSLVPILDDYSNSHFEFGLYFRPRKQMPTRCVNFKD
HHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCCHHHCCHHH
FLIRRVTEIASELEVS
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]