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The map label for this gene is ybaV [C]

Identifier: 167624667

GI number: 167624667

Start: 3337020

End: 3337334

Strand: Reverse

Name: ybaV [C]

Synonym: Shal_2749

Alternate gene names: 167624667

Gene position: 3337334-3337020 (Counterclockwise)

Preceding gene: 167624669

Following gene: 167624664

Centisome position: 63.85

GC content: 40.0

Gene sequence:

>315_bases
ATGTACAAAGTTTTTTTGTCTGTTTTATGCCTGTCTAGTTTATTAATATTCCCTGCAGTGTCGGCAACCAAGGTTGCAGA
AACCCCTACTTCTGAGCAAGCAAAACAATCTCAAGCTAAATCAGAGTTGATTAAGATTAATAGTGCAACGGTTGCTCAGT
TGTCTGCGTTAAGTGGTATCGGGGAGGCTAAGGCGGCTGCAATTGTTGAGTATCGTCAAGTGCATGGTAAATTTGACTCA
GTAGATCAACTCACTGAAGTTAAGGGAATTGGTGAAAAGTTGATCGAGAAAAATCGCAGTCAACTAAGTTTATAG

Upstream 100 bases:

>100_bases
CGCCTGTTGGCGGAATTCGAGCCTATGATCTACCTTTTAGTCGTGGCCAAGGAAAAAGGATTGCGGCCATACATTTAAGG
ATAAATAAAAGGAGTTAACT

Downstream 100 bases:

>100_bases
TCAACTATGGCTAAATAACTCGCTATAGCTAAATAGTTAAATAAACAGTTAAACCCTCGCGCTATCAACTCTGCCACCCT
CCACCGTATGGTAGTAGTTA

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MYKVFLSVLCLSSLLIFPAVSATKVAETPTSEQAKQSQAKSELIKINSATVAQLSALSGIGEAKAAAIVEYRQVHGKFDS
VDQLTEVKGIGEKLIEKNRSQLSL

Sequences:

>Translated_104_residues
MYKVFLSVLCLSSLLIFPAVSATKVAETPTSEQAKQSQAKSELIKINSATVAQLSALSGIGEAKAAAIVEYRQVHGKFDS
VDQLTEVKGIGEKLIEKNRSQLSL
>Mature_104_residues
MYKVFLSVLCLSSLLIFPAVSATKVAETPTSEQAKQSQAKSELIKINSATVAQLSALSGIGEAKAAAIVEYRQVHGKFDS
VDQLTEVKGIGEKLIEKNRSQLSL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11152; Mature: 11152

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVFLSVLCLSSLLIFPAVSATKVAETPTSEQAKQSQAKSELIKINSATVAQLSALSGI
CHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GEAKAAAIVEYRQVHGKFDSVDQLTEVKGIGEKLIEKNRSQLSL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYKVFLSVLCLSSLLIFPAVSATKVAETPTSEQAKQSQAKSELIKINSATVAQLSALSGI
CHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
GEAKAAAIVEYRQVHGKFDSVDQLTEVKGIGEKLIEKNRSQLSL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]