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The map label for this gene is ybcJ [H]

Identifier: 167624633

GI number: 167624633

Start: 3294683

End: 3294913

Strand: Reverse

Name: ybcJ [H]

Synonym: Shal_2715

Alternate gene names: 167624633

Gene position: 3294913-3294683 (Counterclockwise)

Preceding gene: 167624634

Following gene: 167624632

Centisome position: 63.04

GC content: 43.72

Gene sequence:

>231_bases
GTGAGTTCAGATACTCCAACGTTGACATTAAAGTCAGGCGAAGTTTACATCGAGTTATACAAAGTGTTGAAAGTTCAAGG
AATGTTGAGTGCTGGTGGCGAAGCTAAGCACGTGATTTCTGAAGGGCAAGTGACCGTTAATGGCGAAGTTGAAACCCGCA
AGCGCAAAAAGGTGGTTGCTGGTGAAGTTGTTAGTTTTAACGGCGAAAGCGTTAAAGTTATCGCTGAGTAA

Upstream 100 bases:

>100_bases
CTTAGCAACAGAAAGAGTTTAGCAACACTAGAAAGCATGTATAGGCATCTCAATTGGGTGCTATAATGCTGTCAGTTTTG
ATTATTTAAGGCGAAATACC

Downstream 100 bases:

>100_bases
GTGACAAGAGAGGATTAACATGCAATTTCCAGATGATGATAATGGCAAGATGCTTGAAGCCATGGCTGATGCAGGTATCG
ACTTATCGGTAGCACTTGAT

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSSDTPTLTLKSGEVYIELYKVLKVQGMLSAGGEAKHVISEGQVTVNGEVETRKRKKVVAGEVVSFNGESVKVIAE

Sequences:

>Translated_76_residues
MSSDTPTLTLKSGEVYIELYKVLKVQGMLSAGGEAKHVISEGQVTVNGEVETRKRKKVVAGEVVSFNGESVKVIAE
>Mature_75_residues
SSDTPTLTLKSGEVYIELYKVLKVQGMLSAGGEAKHVISEGQVTVNGEVETRKRKKVVAGEVVSFNGESVKVIAE

Specific function: Its structure and the presence of conserved basic residues indicates that it probably binds RNA [H]

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081752, Length=60, Percent_Identity=55, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8137; Mature: 8006

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDTPTLTLKSGEVYIELYKVLKVQGMLSAGGEAKHVISEGQVTVNGEVETRKRKKVVA
CCCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEE
GEVVSFNGESVKVIAE
CEEEEECCCEEEEEEC
>Mature Secondary Structure 
SSDTPTLTLKSGEVYIELYKVLKVQGMLSAGGEAKHVISEGQVTVNGEVETRKRKKVVA
CCCCCEEEEECCCEEEEEEHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEE
GEVVSFNGESVKVIAE
CEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1748668; 7567469 [H]