| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is yibL [H]
Identifier: 167624608
GI number: 167624608
Start: 3262844
End: 3263200
Strand: Reverse
Name: yibL [H]
Synonym: Shal_2690
Alternate gene names: 167624608
Gene position: 3263200-3262844 (Counterclockwise)
Preceding gene: 167624609
Following gene: 167624607
Centisome position: 62.43
GC content: 42.86
Gene sequence:
>357_bases ATGAATTTAAAGCAGGAGCTGCAAACGCTCAACGATAAGTTAGACAAATTTCGTCGTAAGCTAGCAGCAGCTGAAAAGCG TGCTGATCCTACAATTGTGATGCAGTTTAAAAAAGAAATTGCAGCTGTTACTAAGCGGATTAGCGCTGTTAAAGGTCAAC AGACTCGTGAGCTAAGCAAAGAAGGCAGTACAGTTGTTGGCCTTAAGTTTAGCCGTGTATTGACTAAAGCCGAGCAAGCA GACATGGGCAAGCTTAAAAAGTCAGTTAAAGGTTTAGTTGTGGTGCACCCAATGACGGCATTAGGTCGTGAAATGGGGAT CAAGCAAGTCACAGGCTTTGCACCAAAAGAGTTTTAA
Upstream 100 bases:
>100_bases ATACTGTTATAATGTGGCAATAATGGCAAAACAGCGTCAGTTAACTGAGGCTGTTTTTGTTTCTAAACGTGTTAATTAGA TTTGAATTTAAGGTCTGTAA
Downstream 100 bases:
>100_bases CTGCTTTTAGTTATTGATTTAGTGAGCCGCTTCAAGGTTATCTTTAAGCGCTGGGCTTATGCTTGCTCAAGTTAAGTCTA TGGCGGATTAGAGAACACTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 118; Mature: 118
Protein sequence:
>118_residues MNLKQELQTLNDKLDKFRRKLAAAEKRADPTIVMQFKKEIAAVTKRISAVKGQQTRELSKEGSTVVGLKFSRVLTKAEQA DMGKLKKSVKGLVVVHPMTALGREMGIKQVTGFAPKEF
Sequences:
>Translated_118_residues MNLKQELQTLNDKLDKFRRKLAAAEKRADPTIVMQFKKEIAAVTKRISAVKGQQTRELSKEGSTVVGLKFSRVLTKAEQA DMGKLKKSVKGLVVVHPMTALGREMGIKQVTGFAPKEF >Mature_118_residues MNLKQELQTLNDKLDKFRRKLAAAEKRADPTIVMQFKKEIAAVTKRISAVKGQQTRELSKEGSTVVGLKFSRVLTKAEQA DMGKLKKSVKGLVVVHPMTALGREMGIKQVTGFAPKEF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790030, Length=121, Percent_Identity=46.2809917355372, Blast_Score=101, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021230 [H]
Pfam domain/function: PF10928 DUF2810 [H]
EC number: NA
Molecular weight: Translated: 13128; Mature: 13128
Theoretical pI: Translated: 11.07; Mature: 11.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKQELQTLNDKLDKFRRKLAAAEKRADPTIVMQFKKEIAAVTKRISAVKGQQTRELSK CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH EGSTVVGLKFSRVLTKAEQADMGKLKKSVKGLVVVHPMTALGREMGIKQVTGFAPKEF CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCHHHHHCCCCCCC >Mature Secondary Structure MNLKQELQTLNDKLDKFRRKLAAAEKRADPTIVMQFKKEIAAVTKRISAVKGQQTRELSK CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH EGSTVVGLKFSRVLTKAEQADMGKLKKSVKGLVVVHPMTALGREMGIKQVTGFAPKEF CCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]