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The map label for this gene is rsbRD [H]

Identifier: 167624572

GI number: 167624572

Start: 3217289

End: 3217717

Strand: Reverse

Name: rsbRD [H]

Synonym: Shal_2653

Alternate gene names: 167624572

Gene position: 3217717-3217289 (Counterclockwise)

Preceding gene: 167624573

Following gene: 167624571

Centisome position: 61.56

GC content: 40.79

Gene sequence:

>429_bases
ATGAATTTAGATAAAGTAGCAGTAAGTAGAAAACAGATTAGTGGTGAGGTGCCAATGGTGGTGGCTGAAATCACCGATGG
CTGTATGTATTCTGGCCTTTTCGGTTCGTTAGACTCCGCTAGAATGAGCGCGGTAATCGAAAAATTAACCTATGAGTGTG
AATCTAGATGCATCAATTTAGTCATCATCGACCTTGGAAATGTTGATGCGATTGACTCTGCCATTGCTGGGCAAATAATT
CGCCTCGGTAATATTTTAAAGCTCGTGGGTGTATCAACAATTTACTGCGGAATAAGTTCCATTTTAGCAAACACTATGGT
GACTACAGGTGTTTCAATCGGTGATGTCAGAGTGGAGCGGGATCTGAAATCTGCCTTGACCTTATCCTATAGGCTTTCAG
GTTATAAACTGATAAAAAACGCTGAATAA

Upstream 100 bases:

>100_bases
ATTGGAAATAAAAGGAATTGAGTCCAAGAAAAAATCATTTACAGCAGCTTGTTTGAGGTTTTTTCTACACTGTTCATAAG
TAAAGCCAAAGGAAGGTTTC

Downstream 100 bases:

>100_bases
TGCGGCCTGATTATTTACAGAAAGATAACCTTTTTATATGTGAAATAATCGAGGAAGCAGATGTTTATTATATCGCTGGC
GTCAGCAAGGTAATAGCAGA

Product: anti-sigma-factor antagonist

Products: NA

Alternate protein names: Stressosome protein rsbRD [H]

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MNLDKVAVSRKQISGEVPMVVAEITDGCMYSGLFGSLDSARMSAVIEKLTYECESRCINLVIIDLGNVDAIDSAIAGQII
RLGNILKLVGVSTIYCGISSILANTMVTTGVSIGDVRVERDLKSALTLSYRLSGYKLIKNAE

Sequences:

>Translated_142_residues
MNLDKVAVSRKQISGEVPMVVAEITDGCMYSGLFGSLDSARMSAVIEKLTYECESRCINLVIIDLGNVDAIDSAIAGQII
RLGNILKLVGVSTIYCGISSILANTMVTTGVSIGDVRVERDLKSALTLSYRLSGYKLIKNAE
>Mature_142_residues
MNLDKVAVSRKQISGEVPMVVAEITDGCMYSGLFGSLDSARMSAVIEKLTYECESRCINLVIIDLGNVDAIDSAIAGQII
RLGNILKLVGVSTIYCGISSILANTMVTTGVSIGDVRVERDLKSALTLSYRLSGYKLIKNAE

Specific function: Negative regulator of sigma-B activity. Non- phosphorylated rsbS binds to rsbT, preventing its association with rsbU. Requires any one of rsbRA, rsbRB, rsbRC or rsbRD to sequester rsbT. When rsbS and the rsbR paralog(s) are phosphorylated, they release rs

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002645 [H]

Pfam domain/function: PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 15208; Mature: 15208

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDKVAVSRKQISGEVPMVVAEITDGCMYSGLFGSLDSARMSAVIEKLTYECESRCINL
CCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEE
VIIDLGNVDAIDSAIAGQIIRLGNILKLVGVSTIYCGISSILANTMVTTGVSIGDVRVER
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DLKSALTLSYRLSGYKLIKNAE
HHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MNLDKVAVSRKQISGEVPMVVAEITDGCMYSGLFGSLDSARMSAVIEKLTYECESRCINL
CCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEEE
VIIDLGNVDAIDSAIAGQIIRLGNILKLVGVSTIYCGISSILANTMVTTGVSIGDVRVER
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DLKSALTLSYRLSGYKLIKNAE
HHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 11157946 [H]