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The map label for this gene is ocd2 [H]

Identifier: 167624566

GI number: 167624566

Start: 3210546

End: 3211469

Strand: Reverse

Name: ocd2 [H]

Synonym: Shal_2647

Alternate gene names: 167624566

Gene position: 3211469-3210546 (Counterclockwise)

Preceding gene: 167624567

Following gene: 167624564

Centisome position: 61.44

GC content: 49.24

Gene sequence:

>924_bases
ATGCAATATTTAAATGAAGCGCAAACCGCAAAACTGATCACCCATCAACTGGCCTATACCGCCGTTAAAGAGGCGTTTAT
CGCAGCCATAACCGATGAAGCGACCCTGTTTCCCGTGGTTAATGCATCAGGACCACAAACGGACTCGATGTTTTCAATGA
AGTCAGCTTCTACGGCAACACTCGTTGGCTGGAAGACGGGGAGCTACTGGCCGGGTAATCAAGCCAAAAACATGCCGTGC
CATGGCACTAATGTATTTCTGTTAAGCCCAGAAACCGGAGAGTTGGTTGCAGTGGTTGCCGCAACACAGGTTAACGCCTA
CCGCACCGCGGCAGCGGACGCGGTTGCAGTCGATTATCTCGCTCGAAAAGATGCCACTGTGTTGGCTGTATTTGGCACTG
GCCACCAAGCCGAGTACGAAGTGTTAGCCATTGCACAAGTGCGTGATATCACTAAGGTGATGGTTGTTGGTCGAGATAAG
CATCGTTGCGAAGCCTTTATTAAGCGTCTCGTCGATAAAGGCTTGCAAGCAGAGTGTACAGTCACCAGTGCCCAATATGG
CTGTGAAAGTGCAGATATTATCGTGACCGCAACCACAGCCTGTGCGCCGCTATTTGAGGCCAGCTGGGTTAAACCGGGCA
CCCATATCTCAGCCATGGGCGCAGATAAAGTCGGCAAGCAAGAGCTACCGGCTGAGCTGTATAAAAACTCAAGTTTATTT
TGTGATTATGGCGCGCAGTCAGTCGTTATCGGTGAATTTCAGCACTCGAATCATGCGCAAGTGACAGAGATTGGTAAAGT
TATTACTAGCGCATTAGCAGGGCGCATTGATAATGCCGATATTACGATTTTTGATAGCTCAGGCATTGCCATTCAAGACT
TGTTTGTCGCCGCTAAACTGCTAGAGCTCAGCCAACTGCAATAA

Upstream 100 bases:

>100_bases
AATCATGCCTGCGCCACCGCCTCTATGCATCAACACTACCATGTGTTTGATACACAAGATAACACCTACGAGATCTGGAA
CCGAATTCAAGGCTGGTAAC

Downstream 100 bases:

>100_bases
GGTTGCAATTAATTGTTCATCAAATCACTAGATGATAGCACTAAACGTTTGCTCTAAAAGCCAGTCGCTAACTGCTACTG
GCTTTTAATTCTTGCACCAA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQYLNEAQTAKLITHQLAYTAVKEAFIAAITDEATLFPVVNASGPQTDSMFSMKSASTATLVGWKTGSYWPGNQAKNMPC
HGTNVFLLSPETGELVAVVAATQVNAYRTAAADAVAVDYLARKDATVLAVFGTGHQAEYEVLAIAQVRDITKVMVVGRDK
HRCEAFIKRLVDKGLQAECTVTSAQYGCESADIIVTATTACAPLFEASWVKPGTHISAMGADKVGKQELPAELYKNSSLF
CDYGAQSVVIGEFQHSNHAQVTEIGKVITSALAGRIDNADITIFDSSGIAIQDLFVAAKLLELSQLQ

Sequences:

>Translated_307_residues
MQYLNEAQTAKLITHQLAYTAVKEAFIAAITDEATLFPVVNASGPQTDSMFSMKSASTATLVGWKTGSYWPGNQAKNMPC
HGTNVFLLSPETGELVAVVAATQVNAYRTAAADAVAVDYLARKDATVLAVFGTGHQAEYEVLAIAQVRDITKVMVVGRDK
HRCEAFIKRLVDKGLQAECTVTSAQYGCESADIIVTATTACAPLFEASWVKPGTHISAMGADKVGKQELPAELYKNSSLF
CDYGAQSVVIGEFQHSNHAQVTEIGKVITSALAGRIDNADITIFDSSGIAIQDLFVAAKLLELSQLQ
>Mature_307_residues
MQYLNEAQTAKLITHQLAYTAVKEAFIAAITDEATLFPVVNASGPQTDSMFSMKSASTATLVGWKTGSYWPGNQAKNMPC
HGTNVFLLSPETGELVAVVAATQVNAYRTAAADAVAVDYLARKDATVLAVFGTGHQAEYEVLAIAQVRDITKVMVVGRDK
HRCEAFIKRLVDKGLQAECTVTSAQYGCESADIIVTATTACAPLFEASWVKPGTHISAMGADKVGKQELPAELYKNSSLF
CDYGAQSVVIGEFQHSNHAQVTEIGKVITSALAGRIDNADITIFDSSGIAIQDLFVAAKLLELSQLQ

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=230, Percent_Identity=33.4782608695652, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI62241008, Length=230, Percent_Identity=33.4782608695652, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24642678, Length=262, Percent_Identity=25.9541984732824, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 32787; Mature: 32787

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYLNEAQTAKLITHQLAYTAVKEAFIAAITDEATLFPVVNASGPQTDSMFSMKSASTAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEECCCCCEE
LVGWKTGSYWPGNQAKNMPCHGTNVFLLSPETGELVAVVAATQVNAYRTAAADAVAVDYL
EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
ARKDATVLAVFGTGHQAEYEVLAIAQVRDITKVMVVGRDKHRCEAFIKRLVDKGLQAECT
HCCCCEEEEEEECCCCCCEEEEEHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEE
VTSAQYGCESADIIVTATTACAPLFEASWVKPGTHISAMGADKVGKQELPAELYKNSSLF
EEHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCHHHHCCCCEE
CDYGAQSVVIGEFQHSNHAQVTEIGKVITSALAGRIDNADITIFDSSGIAIQDLFVAAKL
EECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
LELSQLQ
HHHHCCC
>Mature Secondary Structure
MQYLNEAQTAKLITHQLAYTAVKEAFIAAITDEATLFPVVNASGPQTDSMFSMKSASTAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCEEEECCCCCEE
LVGWKTGSYWPGNQAKNMPCHGTNVFLLSPETGELVAVVAATQVNAYRTAAADAVAVDYL
EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
ARKDATVLAVFGTGHQAEYEVLAIAQVRDITKVMVVGRDKHRCEAFIKRLVDKGLQAECT
HCCCCEEEEEEECCCCCCEEEEEHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEE
VTSAQYGCESADIIVTATTACAPLFEASWVKPGTHISAMGADKVGKQELPAELYKNSSLF
EEHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCCCCCCCHHCCHHHHCCCCEE
CDYGAQSVVIGEFQHSNHAQVTEIGKVITSALAGRIDNADITIFDSSGIAIQDLFVAAKL
EECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
LELSQLQ
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]