Click here to switch to the map view.

The map label for this gene is ycdZ [H]

Identifier: 167624547

GI number: 167624547

Start: 3184862

End: 3185350

Strand: Reverse

Name: ycdZ [H]

Synonym: Shal_2626

Alternate gene names: 167624547

Gene position: 3185350-3184862 (Counterclockwise)

Preceding gene: 167624548

Following gene: 167624546

Centisome position: 60.94

GC content: 46.63

Gene sequence:

>489_bases
ATGGAAAATCGTTGGCAGATTGCTATTTCAGCAGGACTACTTGCTGCTGTTTGGGCCGGTGTGGCAGATGCTCTGCATTT
GGTTACCTGGATTGGATTTCTGAGCTGTAGTACCTTCTTTGCCCAAACTCATTCCGGCATAAAAGGCATGTTGATGGCGA
TGACCACCAATCTTTCAGGCGTTTTCTGGGGCTGGTTAATTATTTCTGGTAGCAGCTTCTTTGTCTCGCCACTAATGAGT
TACACCTTTACGGGGATCGCAACGGCAGCTATGTGCTTACAGGCTAGCCATCATAAGCTGGCATTTATTCCTGGCGCATT
TATTGGGTGTTGTATCACTTTTGCCATGGGCGCAGATATTGCCGCCATCATTCCGCCATTATTATTGGGCGCAGTGCTTG
GTTACAGTATGAGCCTACTTACTGGCCAATTGATCAGTTTAACCAATAAAATGCAGGGTACTGTCACAGCAGAGGCCAAA
GAGTCTTAA

Upstream 100 bases:

>100_bases
TTGGCTCTGGATCGTGTTTTTTTACATATAAAAAAGGTAATTTAGCTCACCAGATACTAACTCACTTGCAGTAAGTGAGT
TAACGGTAAAGAGGTAAGCT

Downstream 100 bases:

>100_bases
CAAACGCTCAGCTTTACGGTACATCAATAATGATAATAATAGTTACCTCTAGGGGACGGCGAAGGGCTGGACCATAGAGG
ATGGCTTTGGCCAAGGGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MENRWQIAISAGLLAAVWAGVADALHLVTWIGFLSCSTFFAQTHSGIKGMLMAMTTNLSGVFWGWLIISGSSFFVSPLMS
YTFTGIATAAMCLQASHHKLAFIPGAFIGCCITFAMGADIAAIIPPLLLGAVLGYSMSLLTGQLISLTNKMQGTVTAEAK
ES

Sequences:

>Translated_162_residues
MENRWQIAISAGLLAAVWAGVADALHLVTWIGFLSCSTFFAQTHSGIKGMLMAMTTNLSGVFWGWLIISGSSFFVSPLMS
YTFTGIATAAMCLQASHHKLAFIPGAFIGCCITFAMGADIAAIIPPLLLGAVLGYSMSLLTGQLISLTNKMQGTVTAEAK
ES
>Mature_162_residues
MENRWQIAISAGLLAAVWAGVADALHLVTWIGFLSCSTFFAQTHSGIKGMLMAMTTNLSGVFWGWLIISGSSFFVSPLMS
YTFTGIATAAMCLQASHHKLAFIPGAFIGCCITFAMGADIAAIIPPLLLGAVLGYSMSLLTGQLISLTNKMQGTVTAEAK
ES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=135, Percent_Identity=42.962962962963, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 17072; Mature: 17072

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRWQIAISAGLLAAVWAGVADALHLVTWIGFLSCSTFFAQTHSGIKGMLMAMTTNLSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
VFWGWLIISGSSFFVSPLMSYTFTGIATAAMCLQASHHKLAFIPGAFIGCCITFAMGADI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCH
AAIIPPLLLGAVLGYSMSLLTGQLISLTNKMQGTVTAEAKES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MENRWQIAISAGLLAAVWAGVADALHLVTWIGFLSCSTFFAQTHSGIKGMLMAMTTNLSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH
VFWGWLIISGSSFFVSPLMSYTFTGIATAAMCLQASHHKLAFIPGAFIGCCITFAMGADI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCH
AAIIPPLLLGAVLGYSMSLLTGQLISLTNKMQGTVTAEAKES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]