Click here to switch to the map view.

The map label for this gene is mcp4 [H]

Identifier: 167624546

GI number: 167624546

Start: 3183302

End: 3184756

Strand: Reverse

Name: mcp4 [H]

Synonym: Shal_2625

Alternate gene names: 167624546

Gene position: 3184756-3183302 (Counterclockwise)

Preceding gene: 167624547

Following gene: 167624541

Centisome position: 60.93

GC content: 46.67

Gene sequence:

>1455_bases
ATGAAACAGATTAATTTCCGCAAGATTGACGCTCTGTTGATCAAATTGAGCCTAAATGGCAAGTTTTGGGTGCTTTGTTC
TATGGTGACACTGCTCACCGCTGCGGTCGCCTTAACAAACTATCATCACAGCAAGCAGTTTATTGAGTCCAGCTCATTAG
CACGCGCACAATCGAGTATCGATTCTTATGCCAATATCGCTAACACAGAGCAACTTGCAGGTGCTGCATTAAGCCATTTT
GCACAAAAAGCTGGGGTAGAGGTGCGTACAGGCCTAACGACTTCGCGCCGTGGTGATCTGTTATCGGTTAGCGCGCCAGT
GGGCAACAGGGCACTGAGCCAGCAAGTGAATGTCGCGAGTTGGGAGCAAGATGCACTTTCACAAGCAAATATGATGTTAT
TGCTGGCTTTTGTTGGATTATTACCGCTATACCTTTTGAGTTACTGGGTATCTACATCCTTAGGTGGTGGGCTATGGGAT
ATGTACATGGCGATTAAGCGTCTTGCAGATGGTGACTTAACTCATAGACTTAATTTTTTTGGTAAAGACGATTTCAGTCT
TATCGCCCGTGAAATTGATCGCAGTGCCGATAATATGAGTGAAATGGTGCAGGCGATTTCAAGTAATGTACAAACGTTAA
ATGATGCGGCAGACGAGTTTACCCAGCAAGCGAGCCGTAGCGAAGAGCTGACCCATTTTCAGCATCAGTTCTTAGATACA
GTCGCAGTGGCGATGTCACAAATGACTGCGGCGGTGGAAGAGGTGTCCCAAAGCGCGTCTAACACCTCTGAGCAGACTCA
ACAAAATTCGAGTCAAGCCGCCAACAGTCAAGTCCAAATTGCCGAGGCCATTGAACGAATTGCTGTACTAACGAGTAAAA
TTTCTGAAGCGTCAACCTCAGTTGAGAACTTGTCTCATGCCGCCACCGAAATTGGTGCGGTCGTAACGACAATTAATGGC
ATTTCTGAACAAACCAATCTACTTGCGTTAAATGCGGCTATTGAGGCTGCAAGAGCGGGTGAGCAAGGTCGCGGATTTGC
AGTCGTGGCCGATGAAGTGCGAACATTGGCGAGCCGTACACAGCAGGCTACGGTTGAGATCCAGTCGATGATTTTGGGCT
TACAGACAGGTACTGGTAAGCTGTCAGATATTACTAATGAGATCGTATCTCAGGCGGACAAAGGCCGTATGGCGATTGAA
TCTGTCGGACAAGATGTTAATAGTATGGCTGAGTCTATCAGTATCGTGTTTGATATGAGCTCACAGATTGCGGCATCGTC
AGAAGAGCAAAGTGCGGCCTCTCGTGAAATAGCGACGCAACTGAATGATATTCGTGGCCAAGCGGAAACCATTAAAGAAA
CGGCGCAAAACTCGGTGAGCTTAGCGGCCAATTTGGCGGGTTCATCTAAAGGCTTGGAACAAATTTTAGGTCAATATAAG
TTGGCAAGAAATTAA

Upstream 100 bases:

>100_bases
GCTCAGCTTTACGGTACATCAATAATGATAATAATAGTTACCTCTAGGGGACGGCGAAGGGCTGGACCATAGAGGATGGC
TTTGGCCAAGGGAAGGTAGA

Downstream 100 bases:

>100_bases
GCTGACACCCTGCTTAAATTATAAAAAAAGCCAGCAATTTGCTGGCTTTTTTGTGGCACAAAAACGTTAGTTTTTAACTA
AAACTGCTCCAGATAGGGGC

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKQINFRKIDALLIKLSLNGKFWVLCSMVTLLTAAVALTNYHHSKQFIESSSLARAQSSIDSYANIANTEQLAGAALSHF
AQKAGVEVRTGLTTSRRGDLLSVSAPVGNRALSQQVNVASWEQDALSQANMMLLLAFVGLLPLYLLSYWVSTSLGGGLWD
MYMAIKRLADGDLTHRLNFFGKDDFSLIAREIDRSADNMSEMVQAISSNVQTLNDAADEFTQQASRSEELTHFQHQFLDT
VAVAMSQMTAAVEEVSQSASNTSEQTQQNSSQAANSQVQIAEAIERIAVLTSKISEASTSVENLSHAATEIGAVVTTING
ISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQATVEIQSMILGLQTGTGKLSDITNEIVSQADKGRMAIE
SVGQDVNSMAESISIVFDMSSQIAASSEEQSAASREIATQLNDIRGQAETIKETAQNSVSLAANLAGSSKGLEQILGQYK
LARN

Sequences:

>Translated_484_residues
MKQINFRKIDALLIKLSLNGKFWVLCSMVTLLTAAVALTNYHHSKQFIESSSLARAQSSIDSYANIANTEQLAGAALSHF
AQKAGVEVRTGLTTSRRGDLLSVSAPVGNRALSQQVNVASWEQDALSQANMMLLLAFVGLLPLYLLSYWVSTSLGGGLWD
MYMAIKRLADGDLTHRLNFFGKDDFSLIAREIDRSADNMSEMVQAISSNVQTLNDAADEFTQQASRSEELTHFQHQFLDT
VAVAMSQMTAAVEEVSQSASNTSEQTQQNSSQAANSQVQIAEAIERIAVLTSKISEASTSVENLSHAATEIGAVVTTING
ISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQATVEIQSMILGLQTGTGKLSDITNEIVSQADKGRMAIE
SVGQDVNSMAESISIVFDMSSQIAASSEEQSAASREIATQLNDIRGQAETIKETAQNSVSLAANLAGSSKGLEQILGQYK
LARN
>Mature_484_residues
MKQINFRKIDALLIKLSLNGKFWVLCSMVTLLTAAVALTNYHHSKQFIESSSLARAQSSIDSYANIANTEQLAGAALSHF
AQKAGVEVRTGLTTSRRGDLLSVSAPVGNRALSQQVNVASWEQDALSQANMMLLLAFVGLLPLYLLSYWVSTSLGGGLWD
MYMAIKRLADGDLTHRLNFFGKDDFSLIAREIDRSADNMSEMVQAISSNVQTLNDAADEFTQQASRSEELTHFQHQFLDT
VAVAMSQMTAAVEEVSQSASNTSEQTQQNSSQAANSQVQIAEAIERIAVLTSKISEASTSVENLSHAATEIGAVVTTING
ISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQATVEIQSMILGLQTGTGKLSDITNEIVSQADKGRMAIE
SVGQDVNSMAESISIVFDMSSQIAASSEEQSAASREIATQLNDIRGQAETIKETAQNSVSLAANLAGSSKGLEQILGQYK
LARN

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=278, Percent_Identity=30.5755395683453, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1787690, Length=313, Percent_Identity=32.2683706070287, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI2367378, Length=306, Percent_Identity=29.0849673202614, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1788194, Length=415, Percent_Identity=27.4698795180723, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1789453, Length=287, Percent_Identity=31.7073170731707, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013163
- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF08269 Cache_2; PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 51882; Mature: 51882

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQINFRKIDALLIKLSLNGKFWVLCSMVTLLTAAVALTNYHHSKQFIESSSLARAQSSI
CCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSYANIANTEQLAGAALSHFAQKAGVEVRTGLTTSRRGDLLSVSAPVGNRALSQQVNVAS
HHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCCCHHHHHCCCHHH
WEQDALSQANMMLLLAFVGLLPLYLLSYWVSTSLGGGLWDMYMAIKRLADGDLTHRLNFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCC
GKDDFSLIAREIDRSADNMSEMVQAISSNVQTLNDAADEFTQQASRSEELTHFQHQFLDT
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVAMSQMTAAVEEVSQSASNTSEQTQQNSSQAANSQVQIAEAIERIAVLTSKISEASTS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
VENLSHAATEIGAVVTTINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH
QQATVEIQSMILGLQTGTGKLSDITNEIVSQADKGRMAIESVGQDVNSMAESISIVFDMS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECH
SQIAASSEEQSAASREIATQLNDIRGQAETIKETAQNSVSLAANLAGSSKGLEQILGQYK
HHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LARN
HCCC
>Mature Secondary Structure
MKQINFRKIDALLIKLSLNGKFWVLCSMVTLLTAAVALTNYHHSKQFIESSSLARAQSSI
CCCCCHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSYANIANTEQLAGAALSHFAQKAGVEVRTGLTTSRRGDLLSVSAPVGNRALSQQVNVAS
HHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCCCHHHHHCCCHHH
WEQDALSQANMMLLLAFVGLLPLYLLSYWVSTSLGGGLWDMYMAIKRLADGDLTHRLNFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCC
GKDDFSLIAREIDRSADNMSEMVQAISSNVQTLNDAADEFTQQASRSEELTHFQHQFLDT
CCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVAMSQMTAAVEEVSQSASNTSEQTQQNSSQAANSQVQIAEAIERIAVLTSKISEASTS
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
VENLSHAATEIGAVVTTINGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHH
QQATVEIQSMILGLQTGTGKLSDITNEIVSQADKGRMAIESVGQDVNSMAESISIVFDMS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECH
SQIAASSEEQSAASREIATQLNDIRGQAETIKETAQNSVSLAANLAGSSKGLEQILGQYK
HHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LARN
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]