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The map label for this gene is tnpA [H]

Identifier: 167624447

GI number: 167624447

Start: 3053086

End: 3054279

Strand: Reverse

Name: tnpA [H]

Synonym: Shal_2525

Alternate gene names: 167624447

Gene position: 3054279-3053086 (Counterclockwise)

Preceding gene: 167624448

Following gene: 167624446

Centisome position: 58.43

GC content: 43.3

Gene sequence:

>1194_bases
GTGCAGTCCTTTTCTATAGAACAAGGCTCTCATTCTATTCTTGTACGATGCCGCCGAGACGGACGGTTTAAAGTTAAAGA
ACCAAGAACTGAAAGGCGATGTACAGTTGATCACTATGTAAGAAGACGGGTACACGATCTACCTGTTAGTGGACGTCCTT
GTAACATCGAAGTCGAACTCGCTCAGACCAGAGATAAAGACGGAAGAAGGTTAATTGAGGCGACTGAATACGTTGCAAAA
GGAGCGCGATATACCATTCGCTTCTGTCAGTTCATTAGCGGATTGTGCCGATACATGAGCATTCACGCAGTCTCTCAACA
TTTAGGTATTCGTTGGGAGACGATAAAAAACATTGATAAGGAATATCTACATTCAACCTTACCAGGCTTGGAGCCCGCTA
AGCTTAACAACTTAATCCATATTGGCGTTGATGAGGTAGCCCGAGCTAAAGGACATGACTATATGACCGTGGTATACGAT
TTGGTTTCTGGTCATTTAATTTGGGTCGAACACGGTAGAAAAGCAGCGGTCCTAATTTCGTTCTTCGAGCAACTATCAAC
CGCGACGAAAGACGGTATTAAAGCGGTTTCAATGGATATGGGTCAGCCTTATCAATCCGCAGTAAGAAAAATGCTGCCTA
ACGCCGATATCGTTTTCGACCGATTTCATGTGATGCAAAACTACGGCCTGTTAATCAAAAAAGAACGCTCCAAAGCCTTT
CGAAATGGTTCTCATGAAGAGAAAAAGATGCTCAAAGGAACGTTGTTCCTATTGCTGAAAAACGCCCATAAACTGGATGA
GGGGCAGTCAGATAGGCTTGGTGACTTACTCGAGAGTAACAAGACTCTCTGCATCGTTTATATGCTGAAAGAGCAGTTAC
AAGCGATATGGGATGAAGCGTGTTACAAGTCGATGGTAATGGCACTTGAAGCTTGGTGCGGTCTTGCTAGGTCAACGAGG
ATATTGTCCTTGTGTAATTATGCAGACGCACTATTGGATAGAAAAGTCGGCATCTGCAATTACGCAAAATATAGATTAAC
CAACGCTCGAGTTGAAGCAGGGAATGTCTCTATTGGTTTACTCAGGCGAAGAGCTCGAGGGATCCGAGACATTGAATACT
TCAAACTCAAGATCAGACAAACATCAGTCCCTGATAACCATTCAACCTTTTATCCAAATATCAAGCTCATGTAA

Upstream 100 bases:

>100_bases
ATAAATAACATTATCATTTACAACACTTTCTTATTTGTGAATAAGTGAATATACCTTGCCATCATTATCATCCGCCCTAT
TTAGCTTTAAAGGGCAATGT

Downstream 100 bases:

>100_bases
GCGGAGAAGAGCCGGTAAAATATGGCTAAATTCGAAAGGACTAAAGTGACTGTAGCGGTGTCTTTAAGATAGTAGTCGGC
CTCAAATTAGGGGGCAAAGT

Product: transposase IS204/IS1001/IS1096/IS1165 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVELAQTRDKDGRRLIEATEYVAK
GARYTIRFCQFISGLCRYMSIHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYD
LVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDMGQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAF
RNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEACYKSMVMALEAWCGLARSTR
ILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM

Sequences:

>Translated_397_residues
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVELAQTRDKDGRRLIEATEYVAK
GARYTIRFCQFISGLCRYMSIHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYD
LVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDMGQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAF
RNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEACYKSMVMALEAWCGLARSTR
ILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM
>Mature_397_residues
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVELAQTRDKDGRRLIEATEYVAK
GARYTIRFCQFISGLCRYMSIHAVSQHLGIRWETIKNIDKEYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYD
LVSGHLIWVEHGRKAAVLISFFEQLSTATKDGIKAVSMDMGQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAF
RNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEACYKSMVMALEAWCGLARSTR
ILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGLLRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 45671; Mature: 45671

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS00527 RIBOSOMAL_S14

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVEL
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEE
AQTRDKDGRRLIEATEYVAKGARYTIRFCQFISGLCRYMSIHAVSQHLGIRWETIKNIDK
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYDLVSGHLIWVEHGRKAAVLIS
HHHHHHCCCCCCHHHCCEEEECHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
FFEQLSTATKDGIKAVSMDMGQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAF
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECHHHHH
RNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEA
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
CYKSMVMALEAWCGLARSTRILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCEEECCCCHHHH
LRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM
HHHHHCCCCCCEEEEEEEEECCCCCCCCEECCCEEEC
>Mature Secondary Structure
MQSFSIEQGSHSILVRCRRDGRFKVKEPRTERRCTVDHYVRRRVHDLPVSGRPCNIEVEL
CCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEE
AQTRDKDGRRLIEATEYVAKGARYTIRFCQFISGLCRYMSIHAVSQHLGIRWETIKNIDK
ECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EYLHSTLPGLEPAKLNNLIHIGVDEVARAKGHDYMTVVYDLVSGHLIWVEHGRKAAVLIS
HHHHHHCCCCCCHHHCCEEEECHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
FFEQLSTATKDGIKAVSMDMGQPYQSAVRKMLPNADIVFDRFHVMQNYGLLIKKERSKAF
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECHHHHH
RNGSHEEKKMLKGTLFLLLKNAHKLDEGQSDRLGDLLESNKTLCIVYMLKEQLQAIWDEA
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
CYKSMVMALEAWCGLARSTRILSLCNYADALLDRKVGICNYAKYRLTNARVEAGNVSIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEECCEEECCCCHHHH
LRRRARGIRDIEYFKLKIRQTSVPDNHSTFYPNIKLM
HHHHHCCCCCCEEEEEEEEECCCCCCCCEECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]