Click here to switch to the map view.

The map label for this gene is yeeY [H]

Identifier: 167624331

GI number: 167624331

Start: 2907800

End: 2908714

Strand: Reverse

Name: yeeY [H]

Synonym: Shal_2408

Alternate gene names: 167624331

Gene position: 2908714-2907800 (Counterclockwise)

Preceding gene: 167624334

Following gene: 167624330

Centisome position: 55.65

GC content: 45.57

Gene sequence:

>915_bases
ATGCGAATAGATGTCGATGCATTTAAAGTACTGCAGGTTTTAGTCGAAGAAGGCAGTTTTGCCAAGGCTGCAGAGCGTTT
ACATAAGGCGCAGTCCGCAGTGAGCTATCAAGTGAAAAAGCTTGAACAACACCTAGGCGTAAACCTTTTTTGTCGCGACC
AGTATCGAGCAGAATTAACCCCTGAGGGTAAAGTTATCTTGGCTGAAGGACAAAGGCTGCTGCAATACCTTGCCAATATT
GAACATTTAGCCAGCCGTTTTAGTGAAGGTTGGGAGCCAAAACTAGAAATGGTTATTGACGGCGCCTTGCCTATGAAGCC
GATTATGCGAGCTTTAAAACGTCTTGCTGAATTACAAATCCCCACTAAAGTGCAACTAAATATGGAGTTTTTAGGTGGCG
TACAGGATAGATTTGAGCGTGACAGTGCCGATTTAATGCTAGTTAAGGATTATCGAACAGGGCCCTATTACCGACCTCAA
CCTCTACCGTCGATCACCAGTGTATTGGTGGTCAGTGCTGAGCATCCGTTAGCTAAGCAGAAAAGCCTTAGCCTTTTTGA
GTTACAGCGGCATGTGGAGTTAACCATCGAAGACTCATCGGCCGATAAACATTACCGAGATGAACTGCAGTTTGGTGGCG
ATAAGGTATTCTATCTTTCTGGCTTTATGATGAAGAAAAATGCGCTGTTGATGGGATTGGGCTTTGGCTGGATGCCTGAC
TTTTTAATCGAAGAGGAGCTTAGCTGTGGTGAGCTTGTCGAAGTCGACTTTTGTGGTGGCAATCGCTACCGCTTTACCCC
TCAGTTGGTTTCAACCATGGAACGCCCTCTTGGAAGGGCGGGAAGGTTATTTACCGATCTGATTATGGAGGAGTTCAGTG
CTGAAATCGGCTCTGCTGAAATAGGTAGTGATTAA

Upstream 100 bases:

>100_bases
TTTAATTTAGTTGCTTAAATAAACAAAAAAAAGAATAATAATTGGCTTGTGATCATCGAATTTTTAGATGCTTCTGTGAG
GTTTACGTAAGGAAAACACT

Downstream 100 bases:

>100_bases
CGCCTAACACATTATATTCGCCTGCCGTAGAAAGATGGGGCATCGAAGTATAGCTTGCCTCCGCGAGATTTGCAGATTGC
ATGGATATTTGCCAATTGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRIDVDAFKVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEQHLGVNLFCRDQYRAELTPEGKVILAEGQRLLQYLANI
EHLASRFSEGWEPKLEMVIDGALPMKPIMRALKRLAELQIPTKVQLNMEFLGGVQDRFERDSADLMLVKDYRTGPYYRPQ
PLPSITSVLVVSAEHPLAKQKSLSLFELQRHVELTIEDSSADKHYRDELQFGGDKVFYLSGFMMKKNALLMGLGFGWMPD
FLIEEELSCGELVEVDFCGGNRYRFTPQLVSTMERPLGRAGRLFTDLIMEEFSAEIGSAEIGSD

Sequences:

>Translated_304_residues
MRIDVDAFKVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEQHLGVNLFCRDQYRAELTPEGKVILAEGQRLLQYLANI
EHLASRFSEGWEPKLEMVIDGALPMKPIMRALKRLAELQIPTKVQLNMEFLGGVQDRFERDSADLMLVKDYRTGPYYRPQ
PLPSITSVLVVSAEHPLAKQKSLSLFELQRHVELTIEDSSADKHYRDELQFGGDKVFYLSGFMMKKNALLMGLGFGWMPD
FLIEEELSCGELVEVDFCGGNRYRFTPQLVSTMERPLGRAGRLFTDLIMEEFSAEIGSAEIGSD
>Mature_304_residues
MRIDVDAFKVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEQHLGVNLFCRDQYRAELTPEGKVILAEGQRLLQYLANI
EHLASRFSEGWEPKLEMVIDGALPMKPIMRALKRLAELQIPTKVQLNMEFLGGVQDRFERDSADLMLVKDYRTGPYYRPQ
PLPSITSVLVVSAEHPLAKQKSLSLFELQRHVELTIEDSSADKHYRDELQFGGDKVFYLSGFMMKKNALLMGLGFGWMPD
FLIEEELSCGELVEVDFCGGNRYRFTPQLVSTMERPLGRAGRLFTDLIMEEFSAEIGSAEIGSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=298, Percent_Identity=26.1744966442953, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789492, Length=253, Percent_Identity=26.8774703557312, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786713, Length=254, Percent_Identity=27.9527559055118, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786508, Length=240, Percent_Identity=25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790262, Length=188, Percent_Identity=30.8510638297872, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787949, Length=254, Percent_Identity=23.6220472440945, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786401, Length=270, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34486; Mature: 34486

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDVDAFKVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEQHLGVNLFCRDQYRAELT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECC
PEGKVILAEGQRLLQYLANIEHLASRFSEGWEPKLEMVIDGALPMKPIMRALKRLAELQI
CCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
PTKVQLNMEFLGGVQDRFERDSADLMLVKDYRTGPYYRPQPLPSITSVLVVSAEHPLAKQ
CCEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHEEEECCCCCCHH
KSLSLFELQRHVELTIEDSSADKHYRDELQFGGDKVFYLSGFMMKKNALLMGLGFGWMPD
HCCHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCEEEEEECEEEECCEEEEECCCCCCCH
FLIEEELSCGELVEVDFCGGNRYRFTPQLVSTMERPLGRAGRLFTDLIMEEFSAEIGSAE
HHHHCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
IGSD
CCCC
>Mature Secondary Structure
MRIDVDAFKVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEQHLGVNLFCRDQYRAELT
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECC
PEGKVILAEGQRLLQYLANIEHLASRFSEGWEPKLEMVIDGALPMKPIMRALKRLAELQI
CCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
PTKVQLNMEFLGGVQDRFERDSADLMLVKDYRTGPYYRPQPLPSITSVLVVSAEHPLAKQ
CCEEEECHHHHCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHEEEECCCCCCHH
KSLSLFELQRHVELTIEDSSADKHYRDELQFGGDKVFYLSGFMMKKNALLMGLGFGWMPD
HCCHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCEEEEEECEEEECCEEEEECCCCCCCH
FLIEEELSCGELVEVDFCGGNRYRFTPQLVSTMERPLGRAGRLFTDLIMEEFSAEIGSAE
HHHHCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
IGSD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]