| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is bcp [H]
Identifier: 167624247
GI number: 167624247
Start: 2809093
End: 2809575
Strand: Direct
Name: bcp [H]
Synonym: Shal_2323
Alternate gene names: 167624247
Gene position: 2809093-2809575 (Clockwise)
Preceding gene: 167624246
Following gene: 167624249
Centisome position: 53.74
GC content: 42.65
Gene sequence:
>483_bases ATGGATAAAAATATGAAAACCTTAACCGTTGGCGATATTGCGCCGCTTTTTACCCTACAAAACCAAAAAGACGAAACCGT TAGCTTAACTGAGGCGCTAAAAACTGGCCCAGTGCTGGTTTACTTCTATCCAAAGGCTTCGACTCCTGGTTGCACGGTAC AGGCCTGTGGGTTAAGAGATAGTAAAGAAGAGCTCAATAGCCTCTGTGTTACAGTATTTGGGGTAAGTCCCGATCCTGTG GCCAAGCTTGCTAGGTTTTCAGATAAGCAGTCGCTTAACTTTTCTCTACTTAGCGATGAAGATCATGCCATTGCCGACGC TTTTGGCGTATGGGGTGAAAAGAAGTTCATGGGTAAAATTTATGACGGTATACATCGCTTAAGCTTCTTGATTGGTCAAG ACGGCAAAGTGGCACATGTATTCAATAAGTTTAAAACGAAAGATCATCATGAAGTTATCCTCGCTCATTTAAAGAGTCGC TAA
Upstream 100 bases:
>100_bases CTTAGATAAACTCGAAGTCAGCTTAAATGATCTAGCAGCCGAGCTAACTCTAGAATGTACCATTGAGCGTATGCAAGGCG TTGAAAGTTAAATTTTCAGA
Downstream 100 bases:
>100_bases CCATTATCAAACTAACTTGATAAGTTGTTCGTTCACATTGTAAAAAGGAGCCCTATGGCTCCTTTTTTTGTTATAGACAC TTAGTTAAAAGAGGTATGGA
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein homolog; Thioredoxin reductase [H]
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues MDKNMKTLTVGDIAPLFTLQNQKDETVSLTEALKTGPVLVYFYPKASTPGCTVQACGLRDSKEELNSLCVTVFGVSPDPV AKLARFSDKQSLNFSLLSDEDHAIADAFGVWGEKKFMGKIYDGIHRLSFLIGQDGKVAHVFNKFKTKDHHEVILAHLKSR
Sequences:
>Translated_160_residues MDKNMKTLTVGDIAPLFTLQNQKDETVSLTEALKTGPVLVYFYPKASTPGCTVQACGLRDSKEELNSLCVTVFGVSPDPV AKLARFSDKQSLNFSLLSDEDHAIADAFGVWGEKKFMGKIYDGIHRLSFLIGQDGKVAHVFNKFKTKDHHEVILAHLKSR >Mature_160_residues MDKNMKTLTVGDIAPLFTLQNQKDETVSLTEALKTGPVLVYFYPKASTPGCTVQACGLRDSKEELNSLCVTVFGVSPDPV AKLARFSDKQSLNFSLLSDEDHAIADAFGVWGEKKFMGKIYDGIHRLSFLIGQDGKVAHVFNKFKTKDHHEVILAHLKSR
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788825, Length=155, Percent_Identity=60.6451612903226, Blast_Score=196, Evalue=7e-52, Organism=Saccharomyces cerevisiae, GI6322180, Length=113, Percent_Identity=40.7079646017699, Blast_Score=85, Evalue=5e-18,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17716; Mature: 17716
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKNMKTLTVGDIAPLFTLQNQKDETVSLTEALKTGPVLVYFYPKASTPGCTVQACGLRD CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCC SKEELNSLCVTVFGVSPDPVAKLARFSDKQSLNFSLLSDEDHAIADAFGVWGEKKFMGKI CHHHHHHEEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHH YDGIHRLSFLIGQDGKVAHVFNKFKTKDHHEVILAHLKSR HHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure MDKNMKTLTVGDIAPLFTLQNQKDETVSLTEALKTGPVLVYFYPKASTPGCTVQACGLRD CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCC SKEELNSLCVTVFGVSPDPVAKLARFSDKQSLNFSLLSDEDHAIADAFGVWGEKKFMGKI CHHHHHHEEEEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHHH YDGIHRLSFLIGQDGKVAHVFNKFKTKDHHEVILAHLKSR HHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]