Click here to switch to the map view.

The map label for this gene is nlpB [H]

Identifier: 167624244

GI number: 167624244

Start: 2806322

End: 2807419

Strand: Reverse

Name: nlpB [H]

Synonym: Shal_2320

Alternate gene names: 167624244

Gene position: 2807419-2806322 (Counterclockwise)

Preceding gene: 167624245

Following gene: 167624243

Centisome position: 53.71

GC content: 40.98

Gene sequence:

>1098_bases
ATGCTAAAGCAAATATCTCCACTTATTTTAGTTGCAGCTGTTACTGCATGTAGTACGCCAATTGACAGAAGACAGGCTAA
TGACACGGATCAGAACTATCAAGATCTCGTGGTCGCGCCTGAATTAGTGATCCCAGACGGATTGAATAAACCAACTTATA
GTAAGGAATATGACATTCCTGCTGTAGGCAGTAAGGCTGACCAAAGTTTAGTTGGTCGACAGCTTGATATTCGACCACCA
CTGCAAGTGCTGCCTATGGCCGAGGGGACGCGTGTCGAAGAGGGCAGTGACAATATCAAGATCGTAGTTGAATCGATTGA
TAATGATATTGATCTAAAGCAAGAGTTATTTAATGTTTTAAAAGAGTACTTTGCGAGTAAGTCTATTCCACTGCGCAGTG
AAAACTATGAGCAAGGCACGCTGGAAACTGATTGGATCGAAAGTTCGCAAGTGATTGAATCTAGTTTTTGGGGAAGTGAC
AAAGTTTATACGCTAAAACAGCGTTACTTGTATAAGGTTGATGTTCGTCCTCATGGGCGTAGTGGCAACTTGATGATTGA
CTTGATTGAACATGAAGAAAGCTATGATGGCGATCGACAAGATATTCTATTAAGCGGAGAAGATAAGCGTCGTTACACTA
TTGATAGATTGAATGACTCAATCAGTTATATCAGTATCGAACGTGCTAAAGCGCTGAAAGCTAAACGCTTGAAGCAAAGT
CTCGGCATAGATGTCAATCTTATTGCAGATGCTGAAGAACAAGCTTATTGGTTAGCCGATGCTAAGTTTAAACGTACTTG
GGACCGCTTACGTATCGTGTTACCAGAAATGGGCTTTGAAATCGTCGATATGGACAGTAACAAAGGACTATTGTACATCA
ATGTGACTGATGATTCAGGCTTCTGGAGCTCGTTATGGAGTGAAAAAGAGCTACCGATTGAAGCGGGTTCTTATCGTATT
GAACTTAAAGACGGTGTTGATGATAAGACTGAAATACATCTCTTAAACGGCAAAAACGAGCCACTTTCTAACGAAGTTGT
TACTGCCGTTTATGATGGTTTCTCTGAATTGATGCAAGAAGATCGTAAAGTGCGTTAA

Upstream 100 bases:

>100_bases
TAGAGGTGATATTCGTTTACCTTTAACTGAACTTTCTACAGAGTTTCATGGTCTGTTGCTAGAAGCGATGAAAAATGCCC
GAATCGAGGTTGAATAATAA

Downstream 100 bases:

>100_bases
TCAAAATTATTAACTGCGAATTATTAATTGCAAAAGGAGCCTCAGGGCTCCTTTTTTGTTTGTGATGAAAAGAATTGGAT
GTAACTCAGTTGTATAATTT

Product: NlpB/DapX family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MLKQISPLILVAAVTACSTPIDRRQANDTDQNYQDLVVAPELVIPDGLNKPTYSKEYDIPAVGSKADQSLVGRQLDIRPP
LQVLPMAEGTRVEEGSDNIKIVVESIDNDIDLKQELFNVLKEYFASKSIPLRSENYEQGTLETDWIESSQVIESSFWGSD
KVYTLKQRYLYKVDVRPHGRSGNLMIDLIEHEESYDGDRQDILLSGEDKRRYTIDRLNDSISYISIERAKALKAKRLKQS
LGIDVNLIADAEEQAYWLADAKFKRTWDRLRIVLPEMGFEIVDMDSNKGLLYINVTDDSGFWSSLWSEKELPIEAGSYRI
ELKDGVDDKTEIHLLNGKNEPLSNEVVTAVYDGFSELMQEDRKVR

Sequences:

>Translated_365_residues
MLKQISPLILVAAVTACSTPIDRRQANDTDQNYQDLVVAPELVIPDGLNKPTYSKEYDIPAVGSKADQSLVGRQLDIRPP
LQVLPMAEGTRVEEGSDNIKIVVESIDNDIDLKQELFNVLKEYFASKSIPLRSENYEQGTLETDWIESSQVIESSFWGSD
KVYTLKQRYLYKVDVRPHGRSGNLMIDLIEHEESYDGDRQDILLSGEDKRRYTIDRLNDSISYISIERAKALKAKRLKQS
LGIDVNLIADAEEQAYWLADAKFKRTWDRLRIVLPEMGFEIVDMDSNKGLLYINVTDDSGFWSSLWSEKELPIEAGSYRI
ELKDGVDDKTEIHLLNGKNEPLSNEVVTAVYDGFSELMQEDRKVR
>Mature_365_residues
MLKQISPLILVAAVTACSTPIDRRQANDTDQNYQDLVVAPELVIPDGLNKPTYSKEYDIPAVGSKADQSLVGRQLDIRPP
LQVLPMAEGTRVEEGSDNIKIVVESIDNDIDLKQELFNVLKEYFASKSIPLRSENYEQGTLETDWIESSQVIESSFWGSD
KVYTLKQRYLYKVDVRPHGRSGNLMIDLIEHEESYDGDRQDILLSGEDKRRYTIDRLNDSISYISIERAKALKAKRLKQS
LGIDVNLIADAEEQAYWLADAKFKRTWDRLRIVLPEMGFEIVDMDSNKGLLYINVTDDSGFWSSLWSEKELPIEAGSYRI
ELKDGVDDKTEIHLLNGKNEPLSNEVVTAVYDGFSELMQEDRKVR

Specific function: Non-essential lipoprotein [H]

COG id: COG3317

COG function: function code M; Uncharacterized lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082112, Length=363, Percent_Identity=23.9669421487603, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010653
- InterPro:   IPR014524 [H]

Pfam domain/function: PF06804 Lipoprotein_18 [H]

EC number: NA

Molecular weight: Translated: 41603; Mature: 41603

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQISPLILVAAVTACSTPIDRRQANDTDQNYQDLVVAPELVIPDGLNKPTYSKEYDIP
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCC
AVGSKADQSLVGRQLDIRPPLQVLPMAEGTRVEEGSDNIKIVVESIDNDIDLKQELFNVL
CCCCCCHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
KEYFASKSIPLRSENYEQGTLETDWIESSQVIESSFWGSDKVYTLKQRYLYKVDVRPHGR
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCC
SGNLMIDLIEHEESYDGDRQDILLSGEDKRRYTIDRLNDSISYISIERAKALKAKRLKQS
CCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEHHHCCCCEEEEEEHHHHHHHHHHHHHH
LGIDVNLIADAEEQAYWLADAKFKRTWDRLRIVLPEMGFEIVDMDSNKGLLYINVTDDSG
HCCEEEEEECCCCCEEEEECCHHHHHHHHHEEEECCCCEEEEEECCCCCEEEEEEECCCC
FWSSLWSEKELPIEAGSYRIELKDGVDDKTEIHLLNGKNEPLSNEVVTAVYDGFSELMQE
HHHHHCCCCCCCEECCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
DRKVR
HCCCC
>Mature Secondary Structure
MLKQISPLILVAAVTACSTPIDRRQANDTDQNYQDLVVAPELVIPDGLNKPTYSKEYDIP
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCC
AVGSKADQSLVGRQLDIRPPLQVLPMAEGTRVEEGSDNIKIVVESIDNDIDLKQELFNVL
CCCCCCHHHHHCCCCCCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
KEYFASKSIPLRSENYEQGTLETDWIESSQVIESSFWGSDKVYTLKQRYLYKVDVRPHGR
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCC
SGNLMIDLIEHEESYDGDRQDILLSGEDKRRYTIDRLNDSISYISIERAKALKAKRLKQS
CCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEHHHCCCCEEEEEEHHHHHHHHHHHHHH
LGIDVNLIADAEEQAYWLADAKFKRTWDRLRIVLPEMGFEIVDMDSNKGLLYINVTDDSG
HCCEEEEEECCCCCEEEEECCHHHHHHHHHEEEECCCCEEEEEECCCCCEEEEEEECCCC
FWSSLWSEKELPIEAGSYRIELKDGVDDKTEIHLLNGKNEPLSNEVVTAVYDGFSELMQE
HHHHHCCCCCCCEECCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
DRKVR
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1885529; 2120198; 9205837; 9278503 [H]