| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624213
Identifier: 167624213
GI number: 167624213
Start: 2773217
End: 2775010
Strand: Direct
Name: 167624213
Synonym: Shal_2289
Alternate gene names: NA
Gene position: 2773217-2775010 (Clockwise)
Preceding gene: 167624212
Following gene: 167624214
Centisome position: 53.06
GC content: 42.53
Gene sequence:
>1794_bases ATGTACTACAGTTATCTCAAGATGGTTTTTTATTTAGGTAACCTTTTGACAAGCAAAGAAATTAATGTCTCTTATGCTAA GCCCGCCCCTACTGGCATAGGGAGTGAATGCTGCAGGCTCAGTCAAATACGAGGTCTATCGCTGCTACTTGCGTTTGCAA TTGCCGCTCGTATTCATGTAGCCCTATTTTATGAGGTTAACTGGGATGAGTTTTATTACTTATCTTTCGTATATCAATAT GAGAACGGAGTACTTTCTGCCCAGCTTCAGACCTTTCATGTTCACTTCTTTAACTGGCTTAAGTTGATTTCCTCCAATGA AGTCACTCAAATTAAAGCTGCGCGTTTAGTTTTAGTGATACTTCAGTCAATAACGGGTTTTTTCATTTACCGCATCGCTC GGCGCATGCTCAGCCCAGCAGCAGCAATATTTGCCGTGCTGTGTTATTTTGCGTTTTCTTTTAACATACGAATGGGAGCA AGTTTTCGTTCTGACCCTATCGTTACCTTTTTCTTAATGGCTAGCCTAGCGCTTGTTTTATCGGAGAAGTTGGAAATTAA ACGTCTCGTTTTGGCTGGAGCATGTATCGCGATTGCGGTACTCATAAGCATCAAATCCCTCCTGTATTTACCCACCTTTG GGTTAATTGCCATCGCGCTTTTTTGCGACTCACAGACTAGAAGCAAGATGATTTATCAGGTCGCTACGGTCTTAGTCGTG GCTCTAGCGGTTTTTGTGGTGTTATATTTTTACCATGGAGCGCTTCTCAACCTTACAGACTCTCCTGCAGCCGATACCGT TAGCCGCAGTTTTGATAAAACAATAAAAAGTGCGACCTTCCTACCGGGATTTTTCTATCTAAAATACTCTCTACTTTATG ATCTTTTTTTCTGGATAACATTGATTTACGGTGTAAAGATTGCATGTGTCGCTCTATTGCCGAAGAAGAGATTAAGCCGA CAAGATCAGCTTATTTTGCTCAGCTTTACCTTCCCACTCTGCACCATCTTTTTTTACCGAAATGCCTTTCCCTACTTCTA TTCATTTATGTTAGCCCCTGCGACAGTGTTATGTGGCTTGGCGTGGGATGGGCTAAAACTAAACTCAAGAAGCAGCAAAG AAACAACCGTGGTGACCAGCTGTATCTTATTCTTTATGGCATTAAGCATCTGCTACCATGGTTTTATTCTTCCAAAAAAG AAACCGTTACAATCACAGCAGGAATTTGTTGACTTAGTGCATACACTTTTCCCTTCGCCCACAAGCTATATTGATTGTTG CTCCATGATCTCTTCCTATCCTCAAGCCGGTTTTTTTATGAGTAGCTGGGGGATGGACTCTTATATTCAGGAGCAGCGGC CTATCTTGAAAAGTTCAATAGAACGGCAACAGCCAACATTTTTAATCGCCAATAACCGCTTTCTTGATCATGCTCGTTTA GCCGAGTTAGCAGAGCCATTACCGAAACAGCTGCTTCATCAAGATCTAACGGCCCTAGAGCAAAACTACATTCCCCATTG GGGGGCACTTTATGTTGCTGGTAAGCATCTATACTTACAGGCTGATACCGTTGACTTTATGATTAGTATCCCCGGTGAAT ACACCCTAGAAGGTACTCAACCCACGGTAATAGACAAACAATGGCTATCTCCAGGAGAAACGGTTTACTTAGCCTTTGGT AAGCATATCGCTGAGCCGACTCTATTAGGTCAAGAGATCACTTTTCGCTGGGGAAACCATCTATATCGTCCGCCTTTACC ATCCGGTTACCGACCGATTTTCACAGGGTTTTAA
Upstream 100 bases:
>100_bases GTAACTCACTCAATTAATGTCCAACAGTTGAGCGGCAATTACTTCATTTTTCAGGGAACAAGACAGGTACGTTAGCTGTA GCTAGCTGTTTTATAAAAAT
Downstream 100 bases:
>100_bases CGGTAATTTTTAAGTTCATCTAGAAAGGGATCTGGAAATGAAATTAATTGTGCAAATTCCTTGTTTTAACGAAGCTGACA ACCTACGTGACGTAATTGAT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 597; Mature: 597
Protein sequence:
>597_residues MYYSYLKMVFYLGNLLTSKEINVSYAKPAPTGIGSECCRLSQIRGLSLLLAFAIAARIHVALFYEVNWDEFYYLSFVYQY ENGVLSAQLQTFHVHFFNWLKLISSNEVTQIKAARLVLVILQSITGFFIYRIARRMLSPAAAIFAVLCYFAFSFNIRMGA SFRSDPIVTFFLMASLALVLSEKLEIKRLVLAGACIAIAVLISIKSLLYLPTFGLIAIALFCDSQTRSKMIYQVATVLVV ALAVFVVLYFYHGALLNLTDSPAADTVSRSFDKTIKSATFLPGFFYLKYSLLYDLFFWITLIYGVKIACVALLPKKRLSR QDQLILLSFTFPLCTIFFYRNAFPYFYSFMLAPATVLCGLAWDGLKLNSRSSKETTVVTSCILFFMALSICYHGFILPKK KPLQSQQEFVDLVHTLFPSPTSYIDCCSMISSYPQAGFFMSSWGMDSYIQEQRPILKSSIERQQPTFLIANNRFLDHARL AELAEPLPKQLLHQDLTALEQNYIPHWGALYVAGKHLYLQADTVDFMISIPGEYTLEGTQPTVIDKQWLSPGETVYLAFG KHIAEPTLLGQEITFRWGNHLYRPPLPSGYRPIFTGF
Sequences:
>Translated_597_residues MYYSYLKMVFYLGNLLTSKEINVSYAKPAPTGIGSECCRLSQIRGLSLLLAFAIAARIHVALFYEVNWDEFYYLSFVYQY ENGVLSAQLQTFHVHFFNWLKLISSNEVTQIKAARLVLVILQSITGFFIYRIARRMLSPAAAIFAVLCYFAFSFNIRMGA SFRSDPIVTFFLMASLALVLSEKLEIKRLVLAGACIAIAVLISIKSLLYLPTFGLIAIALFCDSQTRSKMIYQVATVLVV ALAVFVVLYFYHGALLNLTDSPAADTVSRSFDKTIKSATFLPGFFYLKYSLLYDLFFWITLIYGVKIACVALLPKKRLSR QDQLILLSFTFPLCTIFFYRNAFPYFYSFMLAPATVLCGLAWDGLKLNSRSSKETTVVTSCILFFMALSICYHGFILPKK KPLQSQQEFVDLVHTLFPSPTSYIDCCSMISSYPQAGFFMSSWGMDSYIQEQRPILKSSIERQQPTFLIANNRFLDHARL AELAEPLPKQLLHQDLTALEQNYIPHWGALYVAGKHLYLQADTVDFMISIPGEYTLEGTQPTVIDKQWLSPGETVYLAFG KHIAEPTLLGQEITFRWGNHLYRPPLPSGYRPIFTGF >Mature_597_residues MYYSYLKMVFYLGNLLTSKEINVSYAKPAPTGIGSECCRLSQIRGLSLLLAFAIAARIHVALFYEVNWDEFYYLSFVYQY ENGVLSAQLQTFHVHFFNWLKLISSNEVTQIKAARLVLVILQSITGFFIYRIARRMLSPAAAIFAVLCYFAFSFNIRMGA SFRSDPIVTFFLMASLALVLSEKLEIKRLVLAGACIAIAVLISIKSLLYLPTFGLIAIALFCDSQTRSKMIYQVATVLVV ALAVFVVLYFYHGALLNLTDSPAADTVSRSFDKTIKSATFLPGFFYLKYSLLYDLFFWITLIYGVKIACVALLPKKRLSR QDQLILLSFTFPLCTIFFYRNAFPYFYSFMLAPATVLCGLAWDGLKLNSRSSKETTVVTSCILFFMALSICYHGFILPKK KPLQSQQEFVDLVHTLFPSPTSYIDCCSMISSYPQAGFFMSSWGMDSYIQEQRPILKSSIERQQPTFLIANNRFLDHARL AELAEPLPKQLLHQDLTALEQNYIPHWGALYVAGKHLYLQADTVDFMISIPGEYTLEGTQPTVIDKQWLSPGETVYLAFG KHIAEPTLLGQEITFRWGNHLYRPPLPSGYRPIFTGF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67782; Mature: 67782
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYYSYLKMVFYLGNLLTSKEINVSYAKPAPTGIGSECCRLSQIRGLSLLLAFAIAARIHV CHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE ALFYEVNWDEFYYLSFVYQYENGVLSAQLQTFHVHFFNWLKLISSNEVTQIKAARLVLVI EEEEEECCCCEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LQSITGFFIYRIARRMLSPAAAIFAVLCYFAFSFNIRMGASFRSDPIVTFFLMASLALVL HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHH SEKLEIKRLVLAGACIAIAVLISIKSLLYLPTFGLIAIALFCDSQTRSKMIYQVATVLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ALAVFVVLYFYHGALLNLTDSPAADTVSRSFDKTIKSATFLPGFFYLKYSLLYDLFFWIT HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIYGVKIACVALLPKKRLSRQDQLILLSFTFPLCTIFFYRNAFPYFYSFMLAPATVLCGL HHHHHHHHHHHHCCHHHCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC AWDGLKLNSRSSKETTVVTSCILFFMALSICYHGFILPKKKPLQSQQEFVDLVHTLFPSP CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCCC TSYIDCCSMISSYPQAGFFMSSWGMDSYIQEQRPILKSSIERQQPTFLIANNRFLDHARL CHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHCCHHHHHHHHCCCCEEEECCCCHHHHHH AELAEPLPKQLLHQDLTALEQNYIPHWGALYVAGKHLYLQADTVDFMISIPGEYTLEGTQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCEEEEEECCEEEEEECCCCEEECCCC PTVIDKQWLSPGETVYLAFGKHIAEPTLLGQEITFRWGNHLYRPPLPSGYRPIFTGF CCEECHHHCCCCCEEEEECCHHHCCCHHCCCHHEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MYYSYLKMVFYLGNLLTSKEINVSYAKPAPTGIGSECCRLSQIRGLSLLLAFAIAARIHV CHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE ALFYEVNWDEFYYLSFVYQYENGVLSAQLQTFHVHFFNWLKLISSNEVTQIKAARLVLVI EEEEEECCCCEEEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LQSITGFFIYRIARRMLSPAAAIFAVLCYFAFSFNIRMGASFRSDPIVTFFLMASLALVL HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHH SEKLEIKRLVLAGACIAIAVLISIKSLLYLPTFGLIAIALFCDSQTRSKMIYQVATVLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH ALAVFVVLYFYHGALLNLTDSPAADTVSRSFDKTIKSATFLPGFFYLKYSLLYDLFFWIT HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LIYGVKIACVALLPKKRLSRQDQLILLSFTFPLCTIFFYRNAFPYFYSFMLAPATVLCGL HHHHHHHHHHHHCCHHHCCCCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC AWDGLKLNSRSSKETTVVTSCILFFMALSICYHGFILPKKKPLQSQQEFVDLVHTLFPSP CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCCC TSYIDCCSMISSYPQAGFFMSSWGMDSYIQEQRPILKSSIERQQPTFLIANNRFLDHARL CHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHCCHHHHHHHHCCCCEEEECCCCHHHHHH AELAEPLPKQLLHQDLTALEQNYIPHWGALYVAGKHLYLQADTVDFMISIPGEYTLEGTQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEECCEEEEEECCEEEEEECCCCEEECCCC PTVIDKQWLSPGETVYLAFGKHIAEPTLLGQEITFRWGNHLYRPPLPSGYRPIFTGF CCEECHHHCCCCCEEEEECCHHHCCCHHCCCHHEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA