| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624161
Identifier: 167624161
GI number: 167624161
Start: 2713279
End: 2713722
Strand: Reverse
Name: 167624161
Synonym: Shal_2237
Alternate gene names: NA
Gene position: 2713722-2713279 (Counterclockwise)
Preceding gene: 167624162
Following gene: 167624159
Centisome position: 51.92
GC content: 44.59
Gene sequence:
>444_bases ATGTCCGGAAATGGCACAGAATTACCGCCTTTAGCAACTAAATCTCTACTACGTTCTGCCCTTGATAGTGATAGAATCTC GGCATCAGAATTACCGAGACACTCTATGTATATCCATCATGTTAACGGCATCGACTGGCTGGTGATTACAGCTTTTGAAG AACTGAAAACTTTATTTATCGAAGAAGCCGGTGCGATCCCCTTTTGCTTCTCTACCGCCAGCAAATTGAACCTGATTGTT CAAGCCAAGCGCACTTATGGATATTTGCCTACACTCAGCGGCGTAATCACCGATACCGGCATTTATCAAAGTCAGGATAA CGAAGAAGATTTGAACCCACAGCTTGCCTGCTTGGTTGAAGGGCGTGGTCGGGTATTTATCTATCACGGCGGCTTTGTGG CTTTTGTGGATGACAAGCAAACCTTTATTACTCAAATGGACTGA
Upstream 100 bases:
>100_bases AGCAGTATCTGCACATACCCCGCTGGAGGCGATTAGGTACACCTTTACTCAAAGGTAAACACACTTTGGGGCAAAAGCGT GTTTCAAGTTGGCCTAGTGA
Downstream 100 bases:
>100_bases AAATTATTCAGTAAGGTGAAATCGGCGAATTGGCATCCCTAGCCGTTCATCCGCAAGCGTTTCGCTTTTTAACAGGGTGC GGGAACCTAGCTTCAATAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSGNGTELPPLATKSLLRSALDSDRISASELPRHSMYIHHVNGIDWLVITAFEELKTLFIEEAGAIPFCFSTASKLNLIV QAKRTYGYLPTLSGVITDTGIYQSQDNEEDLNPQLACLVEGRGRVFIYHGGFVAFVDDKQTFITQMD
Sequences:
>Translated_147_residues MSGNGTELPPLATKSLLRSALDSDRISASELPRHSMYIHHVNGIDWLVITAFEELKTLFIEEAGAIPFCFSTASKLNLIV QAKRTYGYLPTLSGVITDTGIYQSQDNEEDLNPQLACLVEGRGRVFIYHGGFVAFVDDKQTFITQMD >Mature_146_residues SGNGTELPPLATKSLLRSALDSDRISASELPRHSMYIHHVNGIDWLVITAFEELKTLFIEEAGAIPFCFSTASKLNLIVQ AKRTYGYLPTLSGVITDTGIYQSQDNEEDLNPQLACLVEGRGRVFIYHGGFVAFVDDKQTFITQMD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16301; Mature: 16169
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGNGTELPPLATKSLLRSALDSDRISASELPRHSMYIHHVNGIDWLVITAFEELKTLFI CCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCEEEEEEHHHHHHHHH EEAGAIPFCFSTASKLNLIVQAKRTYGYLPTLSGVITDTGIYQSQDNEEDLNPQLACLVE HCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEE GRGRVFIYHGGFVAFVDDKQTFITQMD CCCEEEEEECCEEEEEECCCEEEEECC >Mature Secondary Structure SGNGTELPPLATKSLLRSALDSDRISASELPRHSMYIHHVNGIDWLVITAFEELKTLFI CCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCEEEEEEHHHHHHHHH EEAGAIPFCFSTASKLNLIVQAKRTYGYLPTLSGVITDTGIYQSQDNEEDLNPQLACLVE HCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEE GRGRVFIYHGGFVAFVDDKQTFITQMD CCCEEEEEECCEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA