| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624153
Identifier: 167624153
GI number: 167624153
Start: 2700414
End: 2701466
Strand: Reverse
Name: 167624153
Synonym: Shal_2229
Alternate gene names: NA
Gene position: 2701466-2700414 (Counterclockwise)
Preceding gene: 167624154
Following gene: 167624152
Centisome position: 51.68
GC content: 38.37
Gene sequence:
>1053_bases ATGTTTAAAAAAACAATCATTGCAATAACCTTGTCATCTTCATTTGCTATGGGGATTTCACAGGCTGCAACAATATATAA CCACGATAATGGTGACACCCTTAATATATATGGTGAAATGGGGGTCGGTGGGCACATTGGTGCTAACAGTGATTACAATC ACGATGAGTTTTTTGATACCAAGGGTTATGTGGATGACTCTTTTGCTACATTAGGAGTAACAGGTAAACAGTCCAATTTC TTATATCGTCTGGAAATTGATTATCAACGTGAAAACTGGTTAGGAGGTAGTGGTGAATTAGCTCTTGCTATCGATAAATT ATATTTAGGATATGCTTTCGATGAATATCAATGGATTGAATTCGGTTTAACCGATACGGCTTTTGATGATTATGACCATT TTGGTGACTTGACTTTTAACAAGTCGATAGAAACTGGAGAGGCTGGTGATCAAGAAAATACCGTTAAATACCAAGCCGAG TTTACTAACCTACGATATGGCGTGTCATATACATATGAAGGTGAGCACAAAGCTGGCTTCCTTCAAGGAGATATTGTCAA TGGTTATATCGGTTATTTCTCTGACTATTTCTCGGCAGTAATAGGAGCAGAAGCTCGTGGTGGTTCTAATGGTATTAGTC AATATGGTGAACAACAGTTGTTAGGACTCGGTATGCGAGTGTCAGTATTACCGAAACTTATGTTGGGCTTTAATGGATTT ATCGAAGATGAAGATATTGCTACCCGTAAATCTGGTGATACTTATTTAGAATATGAGACCTTCCGTAATTATGGAGCAAT GCTGTCTGCTAAATACCAACTAAGCGAAAGCTGGGAGATTATCAGTTCTTATAATTATGAAAGTTATGAAGGCTGGGATA TCGAAGGACCTAATTATGATTATGAAGAACTTCCTCCTGTTTTCGGTAAAGATCGGATTTGGGGCAGTTTAGGTTTTAAT TTTAGCCCAGCTAATAATATCGTACTTTCTTTAGAGGGTCGTGTTGGGGAAGCTCCAGAAGCCGCTTATGCCTATGCCCG AGTGTACTTTTAA
Upstream 100 bases:
>100_bases TACTAACATTAACAATTCACTCTGCTCGCATTAAATGGATCACATCCTATCCATTAGGATTGATAAATAAAATTTTGGAC TCAATACGGAAGTAGTAGCA
Downstream 100 bases:
>100_bases CCGGGTCTATACCAATTATAAATATACAGGTAGCGTTTAATATGAAAAAAAGTATTGTTTGTCTGGCCATTGCCAGCGCA ATTTCCACTGGAGTTCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN FSPANNIVLSLEGRVGEAPEAAYAYARVYF
Sequences:
>Translated_350_residues MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN FSPANNIVLSLEGRVGEAPEAAYAYARVYF >Mature_350_residues MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN FSPANNIVLSLEGRVGEAPEAAYAYARVYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39224; Mature: 39224
Theoretical pI: Translated: 4.03; Mature: 4.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDT CCCEEEEEEEECCCHHHCHHHEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC KGYVDDSFATLGVTGKQSNFLYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIE CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCEEEEE FGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAEFTNLRYGVSYTYEGEHKAGF ECCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCE LQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCC IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYD CCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC YEELPPVFGKDRIWGSLGFNFSPANNIVLSLEGRVGEAPEAAYAYARVYF HHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHEEEEEEEC >Mature Secondary Structure MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDT CCCEEEEEEEECCCHHHCHHHEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC KGYVDDSFATLGVTGKQSNFLYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIE CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCEEEEE FGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAEFTNLRYGVSYTYEGEHKAGF ECCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCE LQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCC IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYD CCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC YEELPPVFGKDRIWGSLGFNFSPANNIVLSLEGRVGEAPEAAYAYARVYF HHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA