Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167624153

Identifier: 167624153

GI number: 167624153

Start: 2700414

End: 2701466

Strand: Reverse

Name: 167624153

Synonym: Shal_2229

Alternate gene names: NA

Gene position: 2701466-2700414 (Counterclockwise)

Preceding gene: 167624154

Following gene: 167624152

Centisome position: 51.68

GC content: 38.37

Gene sequence:

>1053_bases
ATGTTTAAAAAAACAATCATTGCAATAACCTTGTCATCTTCATTTGCTATGGGGATTTCACAGGCTGCAACAATATATAA
CCACGATAATGGTGACACCCTTAATATATATGGTGAAATGGGGGTCGGTGGGCACATTGGTGCTAACAGTGATTACAATC
ACGATGAGTTTTTTGATACCAAGGGTTATGTGGATGACTCTTTTGCTACATTAGGAGTAACAGGTAAACAGTCCAATTTC
TTATATCGTCTGGAAATTGATTATCAACGTGAAAACTGGTTAGGAGGTAGTGGTGAATTAGCTCTTGCTATCGATAAATT
ATATTTAGGATATGCTTTCGATGAATATCAATGGATTGAATTCGGTTTAACCGATACGGCTTTTGATGATTATGACCATT
TTGGTGACTTGACTTTTAACAAGTCGATAGAAACTGGAGAGGCTGGTGATCAAGAAAATACCGTTAAATACCAAGCCGAG
TTTACTAACCTACGATATGGCGTGTCATATACATATGAAGGTGAGCACAAAGCTGGCTTCCTTCAAGGAGATATTGTCAA
TGGTTATATCGGTTATTTCTCTGACTATTTCTCGGCAGTAATAGGAGCAGAAGCTCGTGGTGGTTCTAATGGTATTAGTC
AATATGGTGAACAACAGTTGTTAGGACTCGGTATGCGAGTGTCAGTATTACCGAAACTTATGTTGGGCTTTAATGGATTT
ATCGAAGATGAAGATATTGCTACCCGTAAATCTGGTGATACTTATTTAGAATATGAGACCTTCCGTAATTATGGAGCAAT
GCTGTCTGCTAAATACCAACTAAGCGAAAGCTGGGAGATTATCAGTTCTTATAATTATGAAAGTTATGAAGGCTGGGATA
TCGAAGGACCTAATTATGATTATGAAGAACTTCCTCCTGTTTTCGGTAAAGATCGGATTTGGGGCAGTTTAGGTTTTAAT
TTTAGCCCAGCTAATAATATCGTACTTTCTTTAGAGGGTCGTGTTGGGGAAGCTCCAGAAGCCGCTTATGCCTATGCCCG
AGTGTACTTTTAA

Upstream 100 bases:

>100_bases
TACTAACATTAACAATTCACTCTGCTCGCATTAAATGGATCACATCCTATCCATTAGGATTGATAAATAAAATTTTGGAC
TCAATACGGAAGTAGTAGCA

Downstream 100 bases:

>100_bases
CCGGGTCTATACCAATTATAAATATACAGGTAGCGTTTAATATGAAAAAAAGTATTGTTTGTCTGGCCATTGCCAGCGCA
ATTTCCACTGGAGTTCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF
LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE
FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF
IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN
FSPANNIVLSLEGRVGEAPEAAYAYARVYF

Sequences:

>Translated_350_residues
MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF
LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE
FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF
IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN
FSPANNIVLSLEGRVGEAPEAAYAYARVYF
>Mature_350_residues
MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDTKGYVDDSFATLGVTGKQSNF
LYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIEFGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAE
FTNLRYGVSYTYEGEHKAGFLQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF
IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYDYEELPPVFGKDRIWGSLGFN
FSPANNIVLSLEGRVGEAPEAAYAYARVYF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39224; Mature: 39224

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDT
CCCEEEEEEEECCCHHHCHHHEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
KGYVDDSFATLGVTGKQSNFLYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIE
CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCEEEEE
FGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAEFTNLRYGVSYTYEGEHKAGF
ECCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCE
LQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCC
IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYD
CCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
YEELPPVFGKDRIWGSLGFNFSPANNIVLSLEGRVGEAPEAAYAYARVYF
HHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHEEEEEEEC
>Mature Secondary Structure
MFKKTIIAITLSSSFAMGISQAATIYNHDNGDTLNIYGEMGVGGHIGANSDYNHDEFFDT
CCCEEEEEEEECCCHHHCHHHEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
KGYVDDSFATLGVTGKQSNFLYRLEIDYQRENWLGGSGELALAIDKLYLGYAFDEYQWIE
CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCEEEEE
FGLTDTAFDDYDHFGDLTFNKSIETGEAGDQENTVKYQAEFTNLRYGVSYTYEGEHKAGF
ECCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCE
LQGDIVNGYIGYFSDYFSAVIGAEARGGSNGISQYGEQQLLGLGMRVSVLPKLMLGFNGF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHCCCCC
IEDEDIATRKSGDTYLEYETFRNYGAMLSAKYQLSESWEIISSYNYESYEGWDIEGPNYD
CCCCCCCCCCCCCEEEEEHHHHCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC
YEELPPVFGKDRIWGSLGFNFSPANNIVLSLEGRVGEAPEAAYAYARVYF
HHHCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCHHEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA