| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624113
Identifier: 167624113
GI number: 167624113
Start: 2649018
End: 2650208
Strand: Direct
Name: 167624113
Synonym: Shal_2189
Alternate gene names: NA
Gene position: 2649018-2650208 (Clockwise)
Preceding gene: 167624111
Following gene: 167624121
Centisome position: 50.68
GC content: 37.36
Gene sequence:
>1191_bases ATGGAAAACGACAAAGTGAATTCGTTTGAGGAAGATCTTGTATGCGGTTTAGTAAAAAAGTACCAACCAGTATCAAGAGC ATATCTAGGTAGTTCCAAAGAACTAAAAGATGGGTCTCAAGAGTTTCTTTCACGAGATGACATGAATGAGATTTTTAAAG AAAAATCAGGGCAATATCCATGCCTAAAGAGAATTAAAACATCAATTAGATATGACGTCGTGTACATACAACCGTCCGTC GCAAGAGATATTTTGCGTTTTTCAAGTCGAGGTGTAATTAATCCAAACAATAAAAATAGACGTATAAGCAAGGCTGAAGT TAAACGATATACCACTGCTATGAATGATGAAAGGTGGTGTTTAACTGGTGAACCAATTGTATTTAGTGATGATGGAGAAT TGCTAAATGGTCATACTCGATTAGAGTCAGCCGCAAACTCATCTAAGGGTTTTATCACAGTTATTATTTATGGTGTAACA GATGACTTATCATTCGCACATATCGATGTAGGTAAAATTCGATCAAGAGCCCAGGTTTTAGAAATGGCGGGAGTGACTGT AGATGCAAGTATTCTATCCAAAGTGGCAATGTTGGCGAAATCTTTTGAACAGACGAAAAACCCTTATGCTTTTCGTGGTA CTCAAGGAACGTCATTCCAGCAAGCTGAAATTCTAGAGTATGTGGAAGCAAAGGAAGAGCTTGCCTTATCTGTCAATTTT GTCGCTGAATTAGCAAAGAGGCATAAGCGTGAGATTCAAGCTGCAATTCATATTTATGCATTCGCTCATTATCTGATTAA ATCGGAAATGCTTAAATATGAAGGCGTTATAGCCATTACACCGGAGGATTATCTATTGCGATTGATATCAGGAATAGGCA TACAGAGTGAGGAGGATATAGAATATCAAGTGAGAAACTTCTTACAGACACAGGTTGGGGAATCAAGTTCTTATGCACTC GTTTGCCGATTAAGTAGTATTTTCAAAGGTTGGAATCATTACCATAACATTGATATTGCAGGAAACAAAATTGCGGTACG TCGTGTTGCTAGATACAAGAAAGATGCTGATGGTAACCGTATGCCAGCTAAAAGTGCCGGTAATATTAATGAAGCATTTA CTTATCCATTCGCAAAAAAAGGGCCAACACCATCGAAAATTCGTAAACAATCTAATTTACAAATCGTTTGA
Upstream 100 bases:
>100_bases TTATACAGATTATAAATAAATTATATATCTTTTCTTGATCGGGGCAGCGCCCCGATCAATACTAGTATATAAGTTTTTTA ATTGGTGTTCGAGGTGTGAG
Downstream 100 bases:
>100_bases AAGTTGTAAGCTCTAATTTTCTAAGTTCTCCTAGTAATGCTTTTCAAATTTCATTGGAGAGAATTCACCTAAATAACTCT ACGTCGAGAGTCCGCTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MENDKVNSFEEDLVCGLVKKYQPVSRAYLGSSKELKDGSQEFLSRDDMNEIFKEKSGQYPCLKRIKTSIRYDVVYIQPSV ARDILRFSSRGVINPNNKNRRISKAEVKRYTTAMNDERWCLTGEPIVFSDDGELLNGHTRLESAANSSKGFITVIIYGVT DDLSFAHIDVGKIRSRAQVLEMAGVTVDASILSKVAMLAKSFEQTKNPYAFRGTQGTSFQQAEILEYVEAKEELALSVNF VAELAKRHKREIQAAIHIYAFAHYLIKSEMLKYEGVIAITPEDYLLRLISGIGIQSEEDIEYQVRNFLQTQVGESSSYAL VCRLSSIFKGWNHYHNIDIAGNKIAVRRVARYKKDADGNRMPAKSAGNINEAFTYPFAKKGPTPSKIRKQSNLQIV
Sequences:
>Translated_396_residues MENDKVNSFEEDLVCGLVKKYQPVSRAYLGSSKELKDGSQEFLSRDDMNEIFKEKSGQYPCLKRIKTSIRYDVVYIQPSV ARDILRFSSRGVINPNNKNRRISKAEVKRYTTAMNDERWCLTGEPIVFSDDGELLNGHTRLESAANSSKGFITVIIYGVT DDLSFAHIDVGKIRSRAQVLEMAGVTVDASILSKVAMLAKSFEQTKNPYAFRGTQGTSFQQAEILEYVEAKEELALSVNF VAELAKRHKREIQAAIHIYAFAHYLIKSEMLKYEGVIAITPEDYLLRLISGIGIQSEEDIEYQVRNFLQTQVGESSSYAL VCRLSSIFKGWNHYHNIDIAGNKIAVRRVARYKKDADGNRMPAKSAGNINEAFTYPFAKKGPTPSKIRKQSNLQIV >Mature_396_residues MENDKVNSFEEDLVCGLVKKYQPVSRAYLGSSKELKDGSQEFLSRDDMNEIFKEKSGQYPCLKRIKTSIRYDVVYIQPSV ARDILRFSSRGVINPNNKNRRISKAEVKRYTTAMNDERWCLTGEPIVFSDDGELLNGHTRLESAANSSKGFITVIIYGVT DDLSFAHIDVGKIRSRAQVLEMAGVTVDASILSKVAMLAKSFEQTKNPYAFRGTQGTSFQQAEILEYVEAKEELALSVNF VAELAKRHKREIQAAIHIYAFAHYLIKSEMLKYEGVIAITPEDYLLRLISGIGIQSEEDIEYQVRNFLQTQVGESSSYAL VCRLSSIFKGWNHYHNIDIAGNKIAVRRVARYKKDADGNRMPAKSAGNINEAFTYPFAKKGPTPSKIRKQSNLQIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44713; Mature: 44713
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENDKVNSFEEDLVCGLVKKYQPVSRAYLGSSKELKDGSQEFLSRDDMNEIFKEKSGQYP CCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCH CLKRIKTSIRYDVVYIQPSVARDILRFSSRGVINPNNKNRRISKAEVKRYTTAMNDERWC HHHHHHHHHEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE LTGEPIVFSDDGELLNGHTRLESAANSSKGFITVIIYGVTDDLSFAHIDVGKIRSRAQVL ECCCCEEECCCCCHHCCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHH EMAGVTVDASILSKVAMLAKSFEQTKNPYAFRGTQGTSFQQAEILEYVEAKEELALSVNF HHHCCEECHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VAELAKRHKREIQAAIHIYAFAHYLIKSEMLKYEGVIAITPEDYLLRLISGIGIQSEEDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCHH EYQVRNFLQTQVGESSSYALVCRLSSIFKGWNHYHNIDIAGNKIAVRRVARYKKDADGNR HHHHHHHHHHHCCCCCCEEEEEEHHHHHHCHHHCCCEEECCCHHHHHHHHHHHCCCCCCC MPAKSAGNINEAFTYPFAKKGPTPSKIRKQSNLQIV CCCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCCC >Mature Secondary Structure MENDKVNSFEEDLVCGLVKKYQPVSRAYLGSSKELKDGSQEFLSRDDMNEIFKEKSGQYP CCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCH CLKRIKTSIRYDVVYIQPSVARDILRFSSRGVINPNNKNRRISKAEVKRYTTAMNDERWC HHHHHHHHHEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE LTGEPIVFSDDGELLNGHTRLESAANSSKGFITVIIYGVTDDLSFAHIDVGKIRSRAQVL ECCCCEEECCCCCHHCCHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHH EMAGVTVDASILSKVAMLAKSFEQTKNPYAFRGTQGTSFQQAEILEYVEAKEELALSVNF HHHCCEECHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VAELAKRHKREIQAAIHIYAFAHYLIKSEMLKYEGVIAITPEDYLLRLISGIGIQSEEDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCHH EYQVRNFLQTQVGESSSYALVCRLSSIFKGWNHYHNIDIAGNKIAVRRVARYKKDADGNR HHHHHHHHHHHCCCCCCEEEEEEHHHHHHCHHHCCCEEECCCHHHHHHHHHHHCCCCCCC MPAKSAGNINEAFTYPFAKKGPTPSKIRKQSNLQIV CCCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA