| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167624083
Identifier: 167624083
GI number: 167624083
Start: 2607619
End: 2608464
Strand: Direct
Name: 167624083
Synonym: Shal_2159
Alternate gene names: NA
Gene position: 2607619-2608464 (Clockwise)
Preceding gene: 167624081
Following gene: 167624086
Centisome position: 49.89
GC content: 38.42
Gene sequence:
>846_bases ATGATACTGACATCTTTGATTGATAATACTAGATTGAATCATCGAACTGACCTAACAATAGAAAGAGGGTTATCTATTCA CGTTAGCACTATGGGGAAGAGCATATTATTTGATGCTGGGAGTAGCAGTGCCTTTTGTGATAATGCCGCCTTATTGAACG TGGATATCAAAGCTGTTGATGCAGCAGTGATTTCACATCGTCATCATGATCATTGTAATGGCGTTAACCATTTTATAGAC AATAACTCGAAAGCTCAGGTCTATTTCCGGGAATGCGACAAGGCCAATTATGTTTTCAAAGCATTTGGTTTTAAAAGTAA TGTAGGTATAAATAAGCAGTTACTGACTAAAGCTACTAACCGCTTGACCTTTGTTAACCAATTAACGGAGATATTTCCTA ATATTTTTATCATCACTAATTTGGTTGATAAATACCCCAAGCCCAAAGGTAATAAATACCTTTTCACTGATTCTGAGGGC TGTTGTAAACCCGATACATTTGATCATGAATTACTGCTAGTTATAAAGGAAGCTGATGGGCTTGTCGTGTTTACGGGTTG CGCTCATAGTGGTGTGCTCAATATGATAGAGACTGCCGTTAATTCATTTCCCACAGCGAAAATCAAAGCCGTTGTTGGTG GTTTTCATTTGGTCGGATTACCGCTCTTTAACAGCATCGGCGGGACTAAGCAGCAAATCGAAGAAATGGGGAAGTTGATG TTAAATTACCCAATAGATAAGTTGTACACTGGACATTGTACAGGCATGAAAGCCTATAACATATTGAAAGGTGTGCTTGG AGAACGCTTAGAATATTTTCCAACAGGTCGTAGCATTAACATTTGA
Upstream 100 bases:
>100_bases GCTTTAAAAGCATGTAATTATCAGTAAGATAAAACGCGCATGTTGTATATTAGAATGTTAAGCGCTAAGGCTCCAATTCA TATTTTTAAGTGACTTAATT
Downstream 100 bases:
>100_bases CTTTATATAATCACTTATCAGATAAAATTTGTCGGTGATTTGTGTCGTTCAGATAGGTTCACGAGTATTAGTGGCTTAAC AAGGCTTACACTGTAAGTGG
Product: beta-lactamase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MILTSLIDNTRLNHRTDLTIERGLSIHVSTMGKSILFDAGSSSAFCDNAALLNVDIKAVDAAVISHRHHDHCNGVNHFID NNSKAQVYFRECDKANYVFKAFGFKSNVGINKQLLTKATNRLTFVNQLTEIFPNIFIITNLVDKYPKPKGNKYLFTDSEG CCKPDTFDHELLLVIKEADGLVVFTGCAHSGVLNMIETAVNSFPTAKIKAVVGGFHLVGLPLFNSIGGTKQQIEEMGKLM LNYPIDKLYTGHCTGMKAYNILKGVLGERLEYFPTGRSINI
Sequences:
>Translated_281_residues MILTSLIDNTRLNHRTDLTIERGLSIHVSTMGKSILFDAGSSSAFCDNAALLNVDIKAVDAAVISHRHHDHCNGVNHFID NNSKAQVYFRECDKANYVFKAFGFKSNVGINKQLLTKATNRLTFVNQLTEIFPNIFIITNLVDKYPKPKGNKYLFTDSEG CCKPDTFDHELLLVIKEADGLVVFTGCAHSGVLNMIETAVNSFPTAKIKAVVGGFHLVGLPLFNSIGGTKQQIEEMGKLM LNYPIDKLYTGHCTGMKAYNILKGVLGERLEYFPTGRSINI >Mature_281_residues MILTSLIDNTRLNHRTDLTIERGLSIHVSTMGKSILFDAGSSSAFCDNAALLNVDIKAVDAAVISHRHHDHCNGVNHFID NNSKAQVYFRECDKANYVFKAFGFKSNVGINKQLLTKATNRLTFVNQLTEIFPNIFIITNLVDKYPKPKGNKYLFTDSEG CCKPDTFDHELLLVIKEADGLVVFTGCAHSGVLNMIETAVNSFPTAKIKAVVGGFHLVGLPLFNSIGGTKQQIEEMGKLM LNYPIDKLYTGHCTGMKAYNILKGVLGERLEYFPTGRSINI
Specific function: Catalyzes the condensation of 6-hydroxymethyl-7,8- dihydropterin pyrophosphate (DHPP) with 4-(beta-D-ribofuranosyl)- aminobenzene-5'-phosphate (beta-RFA-P) to form 7,8-dihydropterin- 6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate, a precursor
COG id: COG1237
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 31091; Mature: 31091
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILTSLIDNTRLNHRTDLTIERGLSIHVSTMGKSILFDAGSSSAFCDNAALLNVDIKAVD CEEHHHHCCCCCCCCCCEEEECCCEEEEEECCCEEEEECCCCCCEECCEEEEEEEHHHHH AAVISHRHHDHCNGVNHFIDNNSKAQVYFRECDKANYVFKAFGFKSNVGINKQLLTKATN HHHHHCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHH RLTFVNQLTEIFPNIFIITNLVDKYPKPKGNKYLFTDSEGCCKPDTFDHELLLVIKEADG HHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCC LVVFTGCAHSGVLNMIETAVNSFPTAKIKAVVGGFHLVGLPLFNSIGGTKQQIEEMGKLM EEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHEEHHHHHHHCCCCHHHHHHHHHHH LNYPIDKLYTGHCTGMKAYNILKGVLGERLEYFPTGRSINI HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MILTSLIDNTRLNHRTDLTIERGLSIHVSTMGKSILFDAGSSSAFCDNAALLNVDIKAVD CEEHHHHCCCCCCCCCCEEEECCCEEEEEECCCEEEEECCCCCCEECCEEEEEEEHHHHH AAVISHRHHDHCNGVNHFIDNNSKAQVYFRECDKANYVFKAFGFKSNVGINKQLLTKATN HHHHHCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHH RLTFVNQLTEIFPNIFIITNLVDKYPKPKGNKYLFTDSEGCCKPDTFDHELLLVIKEADG HHHHHHHHHHHCCCCEEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCC LVVFTGCAHSGVLNMIETAVNSFPTAKIKAVVGGFHLVGLPLFNSIGGTKQQIEEMGKLM EEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHEEHHHHHHHCCCCHHHHHHHHHHH LNYPIDKLYTGHCTGMKAYNILKGVLGERLEYFPTGRSINI HCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]