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The map label for this gene is ydcP [H]

Identifier: 167624078

GI number: 167624078

Start: 2599896

End: 2602265

Strand: Reverse

Name: ydcP [H]

Synonym: Shal_2154

Alternate gene names: 167624078

Gene position: 2602265-2599896 (Counterclockwise)

Preceding gene: 167624079

Following gene: 167624077

Centisome position: 49.79

GC content: 42.74

Gene sequence:

>2370_bases
ATGAGAAAACTTGAACTACTCGCGCCAGGTGGTGACATTGAGTCCATAAAAGCGGCTATCGTTGCTGGTGCTGACGCAGT
GTATTGCGGCCTTAATAGCTTTAATGCCCGTACGCGCGCCGAGAATTTAGGTTTTGAAGATCTGTATGGGCTTCTGCGTA
TTGCCCACCAGCATGACTGTCAACTGTTTCTAACTTTAAATATCATAGTGTTAGAGCAAGAGTTACCTGCCCTACTTAAA
CTGCTTAACCAATTGGTCAATACTGCGATAGATGGTGTTATCGTTCAAGATCTCGGCTTGTTTTACCTATTGAAACAGCA
CTACCCAACACTGGATATTCATGCATCGACTCAGGTAACGACGCACAATACTGGCCAACTCGAGTTTTTATCTCGTTTAG
GCGCATCTAGAGCAAACTTATCAAGAGAGCTTAATCTACCTGAAATCAAACAGATGTCAGACAAGGCTCATGATCTTGAT
ATGCTAACTGAAGTCTTTGTTCACGGCTCAAATTGCATTGGCTTTTCTGGCCTTTGTTACTTCAGCTCAGCCCATGGTGG
TAATTCGGGGAACCGCGGGCGTTGCAGTCAGCCTTGTCGAGATCAATATCAAACCACAGATACTGGCGCTCAATATCCGT
TAAACCTAAAAGATAACTCGGCTTTTTCAGATCTTGATGCTCTGTATGAAGCGGGTGCCGACTCGTTAAAAGTTGAAGGT
AGGATTAAGAAATCTCATTATGTGTACCGGGTGATCGATACATGGCGCAAACAAATCGCAAGGCTTGAGCAGCGTAGCAC
TATCTCAACCGATAAAGCCCCACTCTATACCGTGTTCAACCGTGATTTTTCTAACGGTTACTTACATGGCGCAGTGGGTA
AAAATATGTACATAGATAACCCACGTGATAATGCTGTGCAGCATTTTACTCAACTCGAAAGCCTAAAGTTACTCACAGAG
AAAAACGCTTCTGGAACAGTGAATGTCAAAAAGGCACTCTATGATGAGAAAACAGAAATTATTGCTACCGTTGGCGACAA
AATAGAACTGCTGAGTTTAGCCAAGCCAATTATTACGCTTACGTTTTATGGTCAAGAAGACCAATCATTGCAGATCACCG
TTTCAGTTAGCCCTGCAAACGTGGGGGCTGATACCGAGCAATCTATGGCCGTACGTGAGTTCACGCTTTTATCGGAGGCT
AATCTTGCCACATCAGACAAATATGGGCTCAAAGAAGAATTACTAAAACGTTTCACGAGTCTTGGTAACATTGAGTATGC
CTTAGCACCAATTTGTTTCGATAACTTATCTGCAAACTTGTTCGTGCCGTTTAAGCAGTTAACCACAATGAAACAGCAGA
TTGTGACTTGGTTAAATAACGGCCGAGTGCATGTTGAGCCCGTATCCTTGCAGCAAGTTCGTCAACAGATCAATAGTAAC
AGTTGCGTAAATACAGTCTCAGATGGGATGAATGCTACAGAGCAGAGGCTCTCTACTCATAACGAGCAAGGTACTCAGTT
ATCGATATTAATTGCTAATAGACGAGATCTTGCGCTCTATCGTCAGTTAAAATCGCAGATTGCACTTAAACAGGTGCAAG
TCTATTACTTAGTGCCAGATGCGATAAGCGCTGAGCGTGAGAAGCTAGCCCTTCTGTTTACCCAAGAACCTGAGCTTATT
CCTTGGTTTAGCGCCGTTATTATGGAAAAAGATTTTAACGCCGCTAAACAGCTACTCGATGAGGTTAAACCTAAGTCAAT
CGTGACTAACAATAGTGGTGTTGGCCTTGTGGCCACCGACTTAGGCATTGATTGGGTTGCGGGCCCTTACCTTAATACCA
GTAATTCAGTCAGTATGTACAGCTTGCAGCAACAAGGCTGTAGCGGCGCATTTGTCTCTAATGAATTAAATAGAAAACAG
ATCAAAGCCATAAAAGCGCCTAAGGGCTTTAAGGTGCACTACAGTCTTTATCACCCAATAATGTTGATGATTAGTCGCCA
ATGTCTGTTTTTACAGTCGAGCGGTTGTGATAAAGCGGTTATGGATGACGAGTGTTTAACGGTTTGTAAGAAAGCTACGT
CAATTACCAATATAAAGGGCGTCGATTTTGTGATCGATAAGAAGCGCCGTGAGCATAATGCCTTATATGGCAGTCAACAT
TTCTACAATCCACAAATATTGACTGAACTACCAGGTTACTTCGATTGCGTGATGTTGGATCTGCGCACAGTGGTGACTAA
TAGCCAGTTACAGCAAAGTCAGTTTGAAACTGTAATCAAATTTACTGATTTTTTATCATCGCAATCTACGCCAGATTTTG
CACTTCTTATTAGCAATACCACCAACGTCCAGTACTTAAAAGGTCTGTAA

Upstream 100 bases:

>100_bases
GAGGTTTTACAATAGCGGATTATCACTTTTTTCTGCCCGTAGATAACCGCCCCGCCGTAATGACCCGTTTATGGCATTTT
TGGCCAGCATTAGGAATACC

Downstream 100 bases:

>100_bases
GACAAGCTCATTCTAGCCACTATCTCCAGTCACTATCTCCAGTCACTAAGTCTAGCGACTAAGAATAACCATGAACTCTT
GTGTGTTTACGTTAAGAGTT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLGFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTAIDGVIVQDLGLFYLLKQHYPTLDIHASTQVTTHNTGQLEFLSRLGASRANLSRELNLPEIKQMSDKAHDLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDTGAQYPLNLKDNSAFSDLDALYEAGADSLKVEG
RIKKSHYVYRVIDTWRKQIARLEQRSTISTDKAPLYTVFNRDFSNGYLHGAVGKNMYIDNPRDNAVQHFTQLESLKLLTE
KNASGTVNVKKALYDEKTEIIATVGDKIELLSLAKPIITLTFYGQEDQSLQITVSVSPANVGADTEQSMAVREFTLLSEA
NLATSDKYGLKEELLKRFTSLGNIEYALAPICFDNLSANLFVPFKQLTTMKQQIVTWLNNGRVHVEPVSLQQVRQQINSN
SCVNTVSDGMNATEQRLSTHNEQGTQLSILIANRRDLALYRQLKSQIALKQVQVYYLVPDAISAEREKLALLFTQEPELI
PWFSAVIMEKDFNAAKQLLDEVKPKSIVTNNSGVGLVATDLGIDWVAGPYLNTSNSVSMYSLQQQGCSGAFVSNELNRKQ
IKAIKAPKGFKVHYSLYHPIMLMISRQCLFLQSSGCDKAVMDDECLTVCKKATSITNIKGVDFVIDKKRREHNALYGSQH
FYNPQILTELPGYFDCVMLDLRTVVTNSQLQQSQFETVIKFTDFLSSQSTPDFALLISNTTNVQYLKGL

Sequences:

>Translated_789_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLGFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTAIDGVIVQDLGLFYLLKQHYPTLDIHASTQVTTHNTGQLEFLSRLGASRANLSRELNLPEIKQMSDKAHDLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDTGAQYPLNLKDNSAFSDLDALYEAGADSLKVEG
RIKKSHYVYRVIDTWRKQIARLEQRSTISTDKAPLYTVFNRDFSNGYLHGAVGKNMYIDNPRDNAVQHFTQLESLKLLTE
KNASGTVNVKKALYDEKTEIIATVGDKIELLSLAKPIITLTFYGQEDQSLQITVSVSPANVGADTEQSMAVREFTLLSEA
NLATSDKYGLKEELLKRFTSLGNIEYALAPICFDNLSANLFVPFKQLTTMKQQIVTWLNNGRVHVEPVSLQQVRQQINSN
SCVNTVSDGMNATEQRLSTHNEQGTQLSILIANRRDLALYRQLKSQIALKQVQVYYLVPDAISAEREKLALLFTQEPELI
PWFSAVIMEKDFNAAKQLLDEVKPKSIVTNNSGVGLVATDLGIDWVAGPYLNTSNSVSMYSLQQQGCSGAFVSNELNRKQ
IKAIKAPKGFKVHYSLYHPIMLMISRQCLFLQSSGCDKAVMDDECLTVCKKATSITNIKGVDFVIDKKRREHNALYGSQH
FYNPQILTELPGYFDCVMLDLRTVVTNSQLQQSQFETVIKFTDFLSSQSTPDFALLISNTTNVQYLKGL
>Mature_789_residues
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLGFEDLYGLLRIAHQHDCQLFLTLNIIVLEQELPALLK
LLNQLVNTAIDGVIVQDLGLFYLLKQHYPTLDIHASTQVTTHNTGQLEFLSRLGASRANLSRELNLPEIKQMSDKAHDLD
MLTEVFVHGSNCIGFSGLCYFSSAHGGNSGNRGRCSQPCRDQYQTTDTGAQYPLNLKDNSAFSDLDALYEAGADSLKVEG
RIKKSHYVYRVIDTWRKQIARLEQRSTISTDKAPLYTVFNRDFSNGYLHGAVGKNMYIDNPRDNAVQHFTQLESLKLLTE
KNASGTVNVKKALYDEKTEIIATVGDKIELLSLAKPIITLTFYGQEDQSLQITVSVSPANVGADTEQSMAVREFTLLSEA
NLATSDKYGLKEELLKRFTSLGNIEYALAPICFDNLSANLFVPFKQLTTMKQQIVTWLNNGRVHVEPVSLQQVRQQINSN
SCVNTVSDGMNATEQRLSTHNEQGTQLSILIANRRDLALYRQLKSQIALKQVQVYYLVPDAISAEREKLALLFTQEPELI
PWFSAVIMEKDFNAAKQLLDEVKPKSIVTNNSGVGLVATDLGIDWVAGPYLNTSNSVSMYSLQQQGCSGAFVSNELNRKQ
IKAIKAPKGFKVHYSLYHPIMLMISRQCLFLQSSGCDKAVMDDECLTVCKKATSITNIKGVDFVIDKKRREHNALYGSQH
FYNPQILTELPGYFDCVMLDLRTVVTNSQLQQSQFETVIKFTDFLSSQSTPDFALLISNTTNVQYLKGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=274, Percent_Identity=37.5912408759124, Blast_Score=180, Evalue=3e-46,
Organism=Escherichia coli, GI1788397, Length=311, Percent_Identity=28.9389067524116, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1789548, Length=297, Percent_Identity=29.2929292929293, Blast_Score=105, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 87996; Mature: 87996

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLGFEDLYGLLRIAHQHDC
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCC
QLFLTLNIIVLEQELPALLKLLNQLVNTAIDGVIVQDLGLFYLLKQHYPTLDIHASTQVT
EEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCEEE
THNTGQLEFLSRLGASRANLSRELNLPEIKQMSDKAHDLDMLTEVFVHGSNCIGFSGLCY
ECCCCHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
FSSAHGGNSGNRGRCSQPCRDQYQTTDTGAQYPLNLKDNSAFSDLDALYEAGADSLKVEG
EECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
RIKKSHYVYRVIDTWRKQIARLEQRSTISTDKAPLYTVFNRDFSNGYLHGAVGKNMYIDN
EEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEECC
PRDNAVQHFTQLESLKLLTEKNASGTVNVKKALYDEKTEIIATVGDKIELLSLAKPIITL
CCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCHHEEEECCCHHHHHHHCCCEEEE
TFYGQEDQSLQITVSVSPANVGADTEQSMAVREFTLLSEANLATSDKYGLKEELLKRFTS
EEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LGNIEYALAPICFDNLSANLFVPFKQLTTMKQQIVTWLNNGRVHVEPVSLQQVRQQINSN
CCCCEEEEHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCC
SCVNTVSDGMNATEQRLSTHNEQGTQLSILIANRRDLALYRQLKSQIALKQVQVYYLVPD
CCHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHEEEEEEECCC
AISAEREKLALLFTQEPELIPWFSAVIMEKDFNAAKQLLDEVKPKSIVTNNSGVGLVATD
HHCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEEEEC
LGIDWVAGPYLNTSNSVSMYSLQQQGCSGAFVSNELNRKQIKAIKAPKGFKVHYSLYHPI
CCCCCCCCCCCCCCCCEEEEEHHHCCCCCCHHHCCCCHHHHHHHCCCCCCEEEEHHHHHH
MLMISRQCLFLQSSGCDKAVMDDECLTVCKKATSITNIKGVDFVIDKKRREHNALYGSQH
HHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCCC
FYNPQILTELPGYFDCVMLDLRTVVTNSQLQQSQFETVIKFTDFLSSQSTPDFALLISNT
CCCCHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
TNVQYLKGL
CCCEEECCC
>Mature Secondary Structure
MRKLELLAPGGDIESIKAAIVAGADAVYCGLNSFNARTRAENLGFEDLYGLLRIAHQHDC
CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCC
QLFLTLNIIVLEQELPALLKLLNQLVNTAIDGVIVQDLGLFYLLKQHYPTLDIHASTQVT
EEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCEEE
THNTGQLEFLSRLGASRANLSRELNLPEIKQMSDKAHDLDMLTEVFVHGSNCIGFSGLCY
ECCCCHHHHHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
FSSAHGGNSGNRGRCSQPCRDQYQTTDTGAQYPLNLKDNSAFSDLDALYEAGADSLKVEG
EECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
RIKKSHYVYRVIDTWRKQIARLEQRSTISTDKAPLYTVFNRDFSNGYLHGAVGKNMYIDN
EEECCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEECCCCCEEECC
PRDNAVQHFTQLESLKLLTEKNASGTVNVKKALYDEKTEIIATVGDKIELLSLAKPIITL
CCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCHHEEEECCCHHHHHHHCCCEEEE
TFYGQEDQSLQITVSVSPANVGADTEQSMAVREFTLLSEANLATSDKYGLKEELLKRFTS
EEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LGNIEYALAPICFDNLSANLFVPFKQLTTMKQQIVTWLNNGRVHVEPVSLQQVRQQINSN
CCCCEEEEHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCC
SCVNTVSDGMNATEQRLSTHNEQGTQLSILIANRRDLALYRQLKSQIALKQVQVYYLVPD
CCHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHEEEEEEECCC
AISAEREKLALLFTQEPELIPWFSAVIMEKDFNAAKQLLDEVKPKSIVTNNSGVGLVATD
HHCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCCEEEEEC
LGIDWVAGPYLNTSNSVSMYSLQQQGCSGAFVSNELNRKQIKAIKAPKGFKVHYSLYHPI
CCCCCCCCCCCCCCCCEEEEEHHHCCCCCCHHHCCCCHHHHHHHCCCCCCEEEEHHHHHH
MLMISRQCLFLQSSGCDKAVMDDECLTVCKKATSITNIKGVDFVIDKKRREHNALYGSQH
HHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCCC
FYNPQILTELPGYFDCVMLDLRTVVTNSQLQQSQFETVIKFTDFLSSQSTPDFALLISNT
CCCCHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
TNVQYLKGL
CCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]