| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fabG [H]
Identifier: 167624063
GI number: 167624063
Start: 2578678
End: 2579463
Strand: Direct
Name: fabG [H]
Synonym: Shal_2139
Alternate gene names: 167624063
Gene position: 2578678-2579463 (Clockwise)
Preceding gene: 167624060
Following gene: 167624064
Centisome position: 49.33
GC content: 46.06
Gene sequence:
>786_bases ATGAAACAAGCACCTGAATATGTCTGTGGACATGGTCTGTTAAAAGGTAAGTCTGTTTTGATCACCGCTGCAGCAGGCGC GGGGATCGGTTTTGCTGCCGCTCGACGAGCCGCAGAGGAAGGGTGCCGAGCATTAATGATTTCAGATATTCATCCTAGAC GGCTTGATGAAGCTGTAACTCGTTTACGTGTTGAAACCGGCTTAGAGCATATATACGGCCAACTGTGTAATGTTACTGAT CAGCAAGATGTGACGACATTGATTGAACAAGCGGAATTAAAACTTGCTGGTGTTGATGTATTGATTAATAACGCGGGTTT AGGTGGTCAAAAGAATGTTGTCGATATGACAGACAAAGAATGGTCAACCGTTCTTGATATTACTTTGACAGGCACCTTTA GGATGATCCGCGAGATCTTACCGCACATGCAGGCTCGTGGCAGTGGCGTTATTGTTAATAATGCATCGGTACTTGGCTGG CGCGCACAAAAAGAGCAGGCGCATTATGCCGCCGCAAAAGCGGGGGTTATGGCCTTAACTCGCTGTAGTGCTTTAGAAGC CGCTGAGCATGGTGTTCGAATTAATGCGGTGTCACCCTCAATCGCGTTACATGACTTTTTAAAGAAAGCATCCAGTGAAG AATTACTCAACCAACTTGCAAGTAAAGAAGCATTTGGGCGCGCAGCCGAAGTATGGGAAGTGGCAAATGTAATGATGTTT CTTGCTAGTGATTACTCATCATATATGGCAGGAGAAGTGATCTCTGTCAGCTCACAGCAGGCTTAG
Upstream 100 bases:
>100_bases AATTAACTTCTCTGGATCTGCTTAATGATGATTATCGGGTCATTGTTAAAATGATTTTGCTCAACATTTGTATGGCAATT TAACTATCGAGAGGAAGAAT
Downstream 100 bases:
>100_bases GAGTGACTATGGCTAATATTGAAATATTAAGTGCAGAGCAATTGTTGAGCGCTGCAAACTTAGATCTGGGTCATTCTGAT TGGTTAACCATTTCTCAAGA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MKQAPEYVCGHGLLKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVTRLRVETGLEHIYGQLCNVTD QQDVTTLIEQAELKLAGVDVLINNAGLGGQKNVVDMTDKEWSTVLDITLTGTFRMIREILPHMQARGSGVIVNNASVLGW RAQKEQAHYAAAKAGVMALTRCSALEAAEHGVRINAVSPSIALHDFLKKASSEELLNQLASKEAFGRAAEVWEVANVMMF LASDYSSYMAGEVISVSSQQA
Sequences:
>Translated_261_residues MKQAPEYVCGHGLLKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVTRLRVETGLEHIYGQLCNVTD QQDVTTLIEQAELKLAGVDVLINNAGLGGQKNVVDMTDKEWSTVLDITLTGTFRMIREILPHMQARGSGVIVNNASVLGW RAQKEQAHYAAAKAGVMALTRCSALEAAEHGVRINAVSPSIALHDFLKKASSEELLNQLASKEAFGRAAEVWEVANVMMF LASDYSSYMAGEVISVSSQQA >Mature_261_residues MKQAPEYVCGHGLLKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVTRLRVETGLEHIYGQLCNVTD QQDVTTLIEQAELKLAGVDVLINNAGLGGQKNVVDMTDKEWSTVLDITLTGTFRMIREILPHMQARGSGVIVNNASVLGW RAQKEQAHYAAAKAGVMALTRCSALEAAEHGVRINAVSPSIALHDFLKKASSEELLNQLASKEAFGRAAEVWEVANVMMF LASDYSSYMAGEVISVSSQQA
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=29.3172690763052, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=29.0322580645161, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=30.327868852459, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=29.5275590551181, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=27.5590551181102, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=28.1746031746032, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI40254992, Length=229, Percent_Identity=29.2576419213974, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=28.90625, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=29.2490118577075, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=29.2929292929293, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=30.6451612903226, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI59889578, Length=181, Percent_Identity=28.7292817679558, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=28, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI83715985, Length=254, Percent_Identity=29.1338582677165, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4504505, Length=191, Percent_Identity=26.1780104712042, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=202, Percent_Identity=26.7326732673267, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI31542939, Length=225, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4503301, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.1475409836066, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=32.046332046332, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.1632653061224, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=29.5081967213115, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=27.3469387755102, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=27.3809523809524, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=24.8979591836735, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=26.7441860465116, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=30.1587301587302, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788459, Length=171, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=30.2788844621514, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=27.9527559055118, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17555706, Length=258, Percent_Identity=29.4573643410853, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=30.1960784313725, Blast_Score=97, Evalue=9e-21, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=29.6153846153846, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=28.3400809716599, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=176, Percent_Identity=30.1136363636364, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=27.9693486590038, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71994600, Length=168, Percent_Identity=29.7619047619048, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=31.0077519379845, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17562908, Length=258, Percent_Identity=26.7441860465116, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536651, Length=272, Percent_Identity=28.6764705882353, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193204405, Length=258, Percent_Identity=28.2945736434109, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.6515151515151, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560332, Length=253, Percent_Identity=27.6679841897233, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=25.968992248062, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17508895, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=27.4809160305344, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=27.1317829457364, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17544670, Length=252, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=26.9662921348315, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17568967, Length=186, Percent_Identity=25.2688172043011, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=29.0697674418605, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17561272, Length=221, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17538480, Length=258, Percent_Identity=26.3565891472868, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=25.5813953488372, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17536025, Length=263, Percent_Identity=26.615969581749, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534694, Length=160, Percent_Identity=27.5, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=113, Percent_Identity=37.1681415929204, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=28.0612244897959, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=30.8943089430894, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=28.5140562248996, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=28.9156626506024, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=29.8319327731092, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=30.3643724696356, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357041, Length=238, Percent_Identity=28.1512605042017, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=28.8617886178862, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=28.4974093264249, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=27.5193798449612, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24644337, Length=175, Percent_Identity=33.1428571428571, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 28022; Mature: 28022
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQAPEYVCGHGLLKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVT CCCCCCHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH RLRVETGLEHIYGQLCNVTDQQDVTTLIEQAELKLAGVDVLINNAGLGGQKNVVDMTDKE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECEEEEEECCCCCCCCCEECCCCCC WSTVLDITLTGTFRMIREILPHMQARGSGVIVNNASVLGWRAQKEQAHYAAAKAGVMALT CCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHH RCSALEAAEHGVRINAVSPSIALHDFLKKASSEELLNQLASKEAFGRAAEVWEVANVMMF HHHHHHHHHCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASDYSSYMAGEVISVSSQQA HHHHHHHHHHCHHEECCCCCC >Mature Secondary Structure MKQAPEYVCGHGLLKGKSVLITAAAGAGIGFAAARRAAEEGCRALMISDIHPRRLDEAVT CCCCCCHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH RLRVETGLEHIYGQLCNVTDQQDVTTLIEQAELKLAGVDVLINNAGLGGQKNVVDMTDKE HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECEEEEEECCCCCCCCCEECCCCCC WSTVLDITLTGTFRMIREILPHMQARGSGVIVNNASVLGWRAQKEQAHYAAAKAGVMALT CCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHH RCSALEAAEHGVRINAVSPSIALHDFLKKASSEELLNQLASKEAFGRAAEVWEVANVMMF HHHHHHHHHCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LASDYSSYMAGEVISVSSQQA HHHHHHHHHHCHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]