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The map label for this gene is fadE25 [H]

Identifier: 167624054

GI number: 167624054

Start: 2564874

End: 2566031

Strand: Direct

Name: fadE25 [H]

Synonym: Shal_2130

Alternate gene names: 167624054

Gene position: 2564874-2566031 (Clockwise)

Preceding gene: 167624053

Following gene: 167624055

Centisome position: 49.07

GC content: 46.11

Gene sequence:

>1158_bases
ATGGATTTAACATATACAAAAAAACAACAAGCTTTTCGGTTAGAAGTACGCCAATGGTTAGCGGATAACTTACCGGATCA
AAAACTAGCAAGTTACGACACAAGAGAAGGATTCGAGCAACATCGTGCATGGGAAGGCAAATTATTTGATGCGCGATTAT
CAATGGTTATGTGGCCAGAAGAATTAGGCGGACGTGGCTGTGACCTTATTGAATGGTTGATCTTTGAAGAAGAATATTAT
GCTGTTGATGCGCCAATGCGTGTCAATCAAAATGGTCAGTTACTACTCGGGTCAACCTTAATTGAATACGGTACCGATGA
GCAAAAAAAGCAATTCTTACCCCCTATGGCCGCGAGCCAACATATGTGGGCTCAAGCATGGTCAGAGCCTAACGCAGGTT
CCGACATGGCCGCAATTACCAGTAAAGCGATACGAGACGGCGATCATTATGTGATCAACGGTCAAAAGACTTGGTCTACA
AGAGCTAGTTTTGCCGATTGGTGTTTTGGCTTGTTCCGCAGCGATCCTACTTCGAGTCGCCATCATGGCTTGTCGTATCT
AATGGTGCCACTCGACGCAGAAGGGGTGACCATTAGGCCGATAAAAGCGCTTAACGGAAAAGATGCTTTTGCGGAGATAT
TTTTTGATAACGTCAAAGTTCCAGTCAAAAATCGAGTTGGTGATGAAGGCGTAGGTTGGCGGGTTGCGATGGCGACTGCT
GGCTTTGAAAGAGGACTATTATTGCGCTCTCCAGCACGTTTTCAGCAGACCGCTCGTAAGTTAGTAGAGCTGTATAAAGC
CAATCAACAAACCGCCGACAATGACCCAAGTATTCGAAATCAAGTAAGTGAATATTGGTCGGCGGCCGAGGCTTATGCAT
TGTCTGCCTACAATACCGTTGGTCGGCTAAATCAAGGTGACAAGATTGGCGCTGAGTCGAGCATCAACAAGATTTTTTGG
TCAGAGTTAGATTTGAAGATGCACGAAACCGCCATGCGAATTTTGGGGTCTCGCGCTGAGTTACTCGACAACGATGCAGA
AGAGATGCGCTGGCTCGATGGCTTTTTATTTGCGCAAGCGGGTCCTATTTATGCGGGCTCTAATGAAATTCAACGCAACA
TTATTGCTGAACGTATGCTTGGCCTGCCACGAGCCTAG

Upstream 100 bases:

>100_bases
GGCCTATACCTCTCCAGACTCAGCCGAAACCCGCCGCGCGTTTGTAGAAAAGCGTGAAGCGAGCTTCTAAATTTTAATCC
TTTACCATTCGAGGCAGCTT

Downstream 100 bases:

>100_bases
GGGGAATTATGGACTTTACATTCACAGAAGACGAACTCGCATTTCGAGAAGCCATCAGTCGATTTTTAATGACGGAAGCG
GCGCCTGAAGCATTAAGAGA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MDLTYTKKQQAFRLEVRQWLADNLPDQKLASYDTREGFEQHRAWEGKLFDARLSMVMWPEELGGRGCDLIEWLIFEEEYY
AVDAPMRVNQNGQLLLGSTLIEYGTDEQKKQFLPPMAASQHMWAQAWSEPNAGSDMAAITSKAIRDGDHYVINGQKTWST
RASFADWCFGLFRSDPTSSRHHGLSYLMVPLDAEGVTIRPIKALNGKDAFAEIFFDNVKVPVKNRVGDEGVGWRVAMATA
GFERGLLLRSPARFQQTARKLVELYKANQQTADNDPSIRNQVSEYWSAAEAYALSAYNTVGRLNQGDKIGAESSINKIFW
SELDLKMHETAMRILGSRAELLDNDAEEMRWLDGFLFAQAGPIYAGSNEIQRNIIAERMLGLPRA

Sequences:

>Translated_385_residues
MDLTYTKKQQAFRLEVRQWLADNLPDQKLASYDTREGFEQHRAWEGKLFDARLSMVMWPEELGGRGCDLIEWLIFEEEYY
AVDAPMRVNQNGQLLLGSTLIEYGTDEQKKQFLPPMAASQHMWAQAWSEPNAGSDMAAITSKAIRDGDHYVINGQKTWST
RASFADWCFGLFRSDPTSSRHHGLSYLMVPLDAEGVTIRPIKALNGKDAFAEIFFDNVKVPVKNRVGDEGVGWRVAMATA
GFERGLLLRSPARFQQTARKLVELYKANQQTADNDPSIRNQVSEYWSAAEAYALSAYNTVGRLNQGDKIGAESSINKIFW
SELDLKMHETAMRILGSRAELLDNDAEEMRWLDGFLFAQAGPIYAGSNEIQRNIIAERMLGLPRA
>Mature_385_residues
MDLTYTKKQQAFRLEVRQWLADNLPDQKLASYDTREGFEQHRAWEGKLFDARLSMVMWPEELGGRGCDLIEWLIFEEEYY
AVDAPMRVNQNGQLLLGSTLIEYGTDEQKKQFLPPMAASQHMWAQAWSEPNAGSDMAAITSKAIRDGDHYVINGQKTWST
RASFADWCFGLFRSDPTSSRHHGLSYLMVPLDAEGVTIRPIKALNGKDAFAEIFFDNVKVPVKNRVGDEGVGWRVAMATA
GFERGLLLRSPARFQQTARKLVELYKANQQTADNDPSIRNQVSEYWSAAEAYALSAYNTVGRLNQGDKIGAESSINKIFW
SELDLKMHETAMRILGSRAELLDNDAEEMRWLDGFLFAQAGPIYAGSNEIQRNIIAERMLGLPRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=384, Percent_Identity=27.6041666666667, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI187960098, Length=384, Percent_Identity=27.6041666666667, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4501859, Length=340, Percent_Identity=28.8235294117647, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI4557233, Length=331, Percent_Identity=29.0030211480363, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI21361497, Length=351, Percent_Identity=29.3447293447293, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI4557235, Length=345, Percent_Identity=27.2463768115942, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI76496475, Length=345, Percent_Identity=27.2463768115942, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4501857, Length=388, Percent_Identity=25, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI226958412, Length=392, Percent_Identity=22.9591836734694, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI226958414, Length=342, Percent_Identity=23.6842105263158, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI38505218, Length=209, Percent_Identity=30.622009569378, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI48976061, Length=182, Percent_Identity=31.8681318681319, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI211971008, Length=182, Percent_Identity=31.8681318681319, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI7656849, Length=287, Percent_Identity=24.390243902439, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI87081958, Length=343, Percent_Identity=24.7813411078717, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1786223, Length=343, Percent_Identity=23.6151603498542, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17570075, Length=398, Percent_Identity=29.6482412060301, Blast_Score=123, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17538396, Length=392, Percent_Identity=26.7857142857143, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=339, Percent_Identity=28.3185840707965, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17569725, Length=334, Percent_Identity=28.1437125748503, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17508101, Length=347, Percent_Identity=26.2247838616715, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17534899, Length=349, Percent_Identity=27.2206303724928, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=331, Percent_Identity=28.3987915407855, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71985184, Length=338, Percent_Identity=28.4023668639053, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17551932, Length=333, Percent_Identity=27.9279279279279, Blast_Score=95, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI71985192, Length=193, Percent_Identity=34.7150259067358, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI32563615, Length=186, Percent_Identity=32.7956989247312, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71990804, Length=283, Percent_Identity=27.5618374558304, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562446, Length=200, Percent_Identity=32, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17533517, Length=150, Percent_Identity=30.6666666666667, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71982178, Length=194, Percent_Identity=30.4123711340206, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531909, Length=237, Percent_Identity=25.3164556962025, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21356377, Length=334, Percent_Identity=29.3413173652695, Blast_Score=121, Evalue=7e-28,
Organism=Drosophila melanogaster, GI281363737, Length=353, Percent_Identity=30.3116147308782, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI21355753, Length=365, Percent_Identity=25.4794520547945, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24666513, Length=340, Percent_Identity=26.7647058823529, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24646207, Length=340, Percent_Identity=26.4705882352941, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24660351, Length=350, Percent_Identity=28.2857142857143, Blast_Score=99, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43579; Mature: 43579

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTYTKKQQAFRLEVRQWLADNLPDQKLASYDTREGFEQHRAWEGKLFDARLSMVMWPE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCCEEHHHHHHEECHH
ELGGRGCDLIEWLIFEEEYYAVDAPMRVNQNGQLLLGSTLIEYGTDEQKKQFLPPMAASQ
HHCCCCCHHHHHHHCCCCCEEECCCEEECCCCCEEECCHHHHCCCCHHHHHCCCCCHHHH
HMWAQAWSEPNAGSDMAAITSKAIRDGDHYVINGQKTWSTRASFADWCFGLFRSDPTSSR
HHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
HHGLSYLMVPLDAEGVTIRPIKALNGKDAFAEIFFDNVKVPVKNRVGDEGVGWRVAMATA
CCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEECC
GFERGLLLRSPARFQQTARKLVELYKANQQTADNDPSIRNQVSEYWSAAEAYALSAYNTV
CCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRLNQGDKIGAESSINKIFWSELDLKMHETAMRILGSRAELLDNDAEEMRWLDGFLFAQA
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCC
GPIYAGSNEIQRNIIAERMLGLPRA
CCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLTYTKKQQAFRLEVRQWLADNLPDQKLASYDTREGFEQHRAWEGKLFDARLSMVMWPE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCCEEHHHHHHEECHH
ELGGRGCDLIEWLIFEEEYYAVDAPMRVNQNGQLLLGSTLIEYGTDEQKKQFLPPMAASQ
HHCCCCCHHHHHHHCCCCCEEECCCEEECCCCCEEECCHHHHCCCCHHHHHCCCCCHHHH
HMWAQAWSEPNAGSDMAAITSKAIRDGDHYVINGQKTWSTRASFADWCFGLFRSDPTSSR
HHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
HHGLSYLMVPLDAEGVTIRPIKALNGKDAFAEIFFDNVKVPVKNRVGDEGVGWRVAMATA
CCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEECC
GFERGLLLRSPARFQQTARKLVELYKANQQTADNDPSIRNQVSEYWSAAEAYALSAYNTV
CCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GRLNQGDKIGAESSINKIFWSELDLKMHETAMRILGSRAELLDNDAEEMRWLDGFLFAQA
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCC
GPIYAGSNEIQRNIIAERMLGLPRA
CCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]