| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yxbG [H]
Identifier: 167624027
GI number: 167624027
Start: 2535582
End: 2536370
Strand: Direct
Name: yxbG [H]
Synonym: Shal_2103
Alternate gene names: 167624027
Gene position: 2535582-2536370 (Clockwise)
Preceding gene: 167624026
Following gene: 167624028
Centisome position: 48.51
GC content: 47.78
Gene sequence:
>789_bases ATGCAGTCAAATAGTATTAATCGTGCTCGCCTTCAAGGAAAAGTCGCATTTATTACGGGGGCGGGAAGTGGTATTGGCGC AGCAACAGCTGTTCGCTTAGCTGCTGAGGGGGCGAAGGTTATGATCTGTGGTAGAAATCAGCAGCCATTAGATCTTGTTG TTGAACAGATAAAGCAAGATGGTGGAGTGGCTCAGGCTGTGATTGCTGACGTGTCGAATGAATTTGAACTCGTATCAGCG ATTGAGCGATGTGCTTGCGAATATGGCTCATTGGACATTATGGTCAATAATGCGATGGCATTTACTTGGGGCAGTATCGA AGAGATGGACACCCCATCTTGGCATGCAAATTTTAAGACATCAGTAGACGGTACCTTTTGGGGAACAAAGGCTGCGATGA AATTAATGAAACAAAATGGCGGTAGTATTATCAACCTATCATCTATTTGTGGAGAACTTGGAACAGCATGGATGTCAGGT TATAGCGCAGCTAAAGCGGCTGTCACTAATTTTTCCAGAGCAGCAGCGGCTGAAGGTGCGGCTAGTCGTATTCGTGTCAA TACCGTGATCCCTGCTGTAGTAGAAACACCCGCGACAGAGGGCATGTTATCAGACCCCGCTACTCGTAAAAGCACCGAGC GATTAATACCCATGGGGAGAGTCGGACAACCCGATGAGTTAGCGTCAGTGATCGCGTTTTTGGCGAGTGATGATGCTTCA TATGTTACAGGCGTGAGCTTACCCGTTGATGGTGGTCGCTCGGCAGTACTCGTAACGGCCTTGGATTGA
Upstream 100 bases:
>100_bases AAACTCAGCCTTTTTTACTCTGATTAATACCTAACAAACCGTGATATGCGGTTTAGCTTGGCGCAATTTATGGCCAGCGG CATCATCTAAGGAGATTAAG
Downstream 100 bases:
>100_bases GGTAGCAATGATAAATAACCAATGTATACAAGCCAAACAAAAATTACTTAGCCCATTGAAGCTAGGTGAGATAATCCTCA ATAATCGCGTTGTTATGGCG
Product: short-chain dehydrogenase/reductase SDR
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MQSNSINRARLQGKVAFITGAGSGIGAATAVRLAAEGAKVMICGRNQQPLDLVVEQIKQDGGVAQAVIADVSNEFELVSA IERCACEYGSLDIMVNNAMAFTWGSIEEMDTPSWHANFKTSVDGTFWGTKAAMKLMKQNGGSIINLSSICGELGTAWMSG YSAAKAAVTNFSRAAAAEGAASRIRVNTVIPAVVETPATEGMLSDPATRKSTERLIPMGRVGQPDELASVIAFLASDDAS YVTGVSLPVDGGRSAVLVTALD
Sequences:
>Translated_262_residues MQSNSINRARLQGKVAFITGAGSGIGAATAVRLAAEGAKVMICGRNQQPLDLVVEQIKQDGGVAQAVIADVSNEFELVSA IERCACEYGSLDIMVNNAMAFTWGSIEEMDTPSWHANFKTSVDGTFWGTKAAMKLMKQNGGSIINLSSICGELGTAWMSG YSAAKAAVTNFSRAAAAEGAASRIRVNTVIPAVVETPATEGMLSDPATRKSTERLIPMGRVGQPDELASVIAFLASDDAS YVTGVSLPVDGGRSAVLVTALD >Mature_262_residues MQSNSINRARLQGKVAFITGAGSGIGAATAVRLAAEGAKVMICGRNQQPLDLVVEQIKQDGGVAQAVIADVSNEFELVSA IERCACEYGSLDIMVNNAMAFTWGSIEEMDTPSWHANFKTSVDGTFWGTKAAMKLMKQNGGSIINLSSICGELGTAWMSG YSAAKAAVTNFSRAAAAEGAASRIRVNTVIPAVVETPATEGMLSDPATRKSTERLIPMGRVGQPDELASVIAFLASDDAS YVTGVSLPVDGGRSAVLVTALD
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=37.5494071146245, Blast_Score=135, Evalue=4e-32, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=7e-28, Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=30.7392996108949, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=33.8775510204082, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=30.7377049180328, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI5031737, Length=261, Percent_Identity=29.1187739463602, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=27.4509803921569, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI59889578, Length=221, Percent_Identity=31.2217194570136, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=31.4741035856574, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=30.952380952381, Blast_Score=95, Evalue=5e-20, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=33.0708661417323, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI210032110, Length=206, Percent_Identity=27.6699029126214, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI142976729, Length=226, Percent_Identity=26.9911504424779, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI40254986, Length=222, Percent_Identity=29.7297297297297, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=32.2916666666667, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI31542939, Length=245, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI33667109, Length=206, Percent_Identity=29.6116504854369, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=29.5918367346939, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI4503817, Length=228, Percent_Identity=26.3157894736842, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI32455239, Length=181, Percent_Identity=27.6243093922652, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031765, Length=181, Percent_Identity=27.6243093922652, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI209862901, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI19923983, Length=216, Percent_Identity=28.7037037037037, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4758504, Length=263, Percent_Identity=26.9961977186312, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=31.6091954022989, Blast_Score=68, Evalue=6e-12, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=34.9794238683128, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=33.4661354581673, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=35.1239669421488, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=30.8641975308642, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=31.9672131147541, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=35.4838709677419, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=30.8300395256917, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=30.6772908366534, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=28.5123966942149, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.0588235294118, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=27.4900398406374, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=71, Evalue=9e-14, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=34.5381526104418, Blast_Score=127, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=34.2205323193916, Blast_Score=125, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=35.6060606060606, Blast_Score=124, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=30.3643724696356, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=34.9442379182156, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=33.4630350194552, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=34.9442379182156, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=33.2075471698113, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=33.8403041825095, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=34.0909090909091, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=31.5573770491803, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=30.9701492537313, Blast_Score=116, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=33.9622641509434, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17538486, Length=271, Percent_Identity=36.90036900369, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=32.7067669172932, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=35.1851851851852, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=34.9442379182156, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=33.4586466165414, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=32.962962962963, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=30.7984790874525, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17562908, Length=276, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=32.0754716981132, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=33.1967213114754, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=30.9236947791165, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=30.4, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=28.4, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17568967, Length=241, Percent_Identity=32.7800829875519, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=31.7647058823529, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=30.9803921568627, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17561272, Length=263, Percent_Identity=26.615969581749, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI193203115, Length=246, Percent_Identity=26.0162601626016, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=26.4248704663212, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193203117, Length=244, Percent_Identity=25.8196721311475, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71982365, Length=211, Percent_Identity=26.5402843601896, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71997099, Length=223, Percent_Identity=30.0448430493274, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17555612, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=25.1256281407035, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558628, Length=196, Percent_Identity=26.0204081632653, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=219, Percent_Identity=31.0502283105023, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=29.5275590551181, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=31.9587628865979, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=176, Percent_Identity=28.4090909090909, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=38.2470119521912, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=36.6533864541833, Blast_Score=140, Evalue=9e-34, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=35.4838709677419, Blast_Score=138, Evalue=3e-33, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=33.6, Blast_Score=137, Evalue=5e-33, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=36.9047619047619, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=36.5461847389558, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.6693227091633, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI18859837, Length=279, Percent_Identity=31.1827956989247, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=30.7377049180328, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24640492, Length=213, Percent_Identity=27.6995305164319, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357673, Length=221, Percent_Identity=28.5067873303167, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI221510726, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=27.2277227722772, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=30.1980198019802, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281364892, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581726, Length=213, Percent_Identity=25.3521126760563, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007238, Length=226, Percent_Identity=23.8938053097345, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 27266; Mature: 27266
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSNSINRARLQGKVAFITGAGSGIGAATAVRLAAEGAKVMICGRNQQPLDLVVEQIKQD CCCCCCCHHEECCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHC GGVAQAVIADVSNEFELVSAIERCACEYGSLDIMVNNAMAFTWGSIEEMDTPSWHANFKT CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCHHHCCCCCCCCCEEE SVDGTFWGTKAAMKLMKQNGGSIINLSSICGELGTAWMSGYSAAKAAVTNFSRAAAAEGA CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ASRIRVNTVIPAVVETPATEGMLSDPATRKSTERLIPMGRVGQPDELASVIAFLASDDAS HHEEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC YVTGVSLPVDGGRSAVLVTALD EEEEEEEECCCCCCEEEEEECC >Mature Secondary Structure MQSNSINRARLQGKVAFITGAGSGIGAATAVRLAAEGAKVMICGRNQQPLDLVVEQIKQD CCCCCCCHHEECCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHC GGVAQAVIADVSNEFELVSAIERCACEYGSLDIMVNNAMAFTWGSIEEMDTPSWHANFKT CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEECCCHHHCCCCCCCCCEEE SVDGTFWGTKAAMKLMKQNGGSIINLSSICGELGTAWMSGYSAAKAAVTNFSRAAAAEGA CCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ASRIRVNTVIPAVVETPATEGMLSDPATRKSTERLIPMGRVGQPDELASVIAFLASDDAS HHEEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC YVTGVSLPVDGGRSAVLVTALD EEEEEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]