| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yfiQ [H]
Identifier: 167623888
GI number: 167623888
Start: 2353249
End: 2355951
Strand: Reverse
Name: yfiQ [H]
Synonym: Shal_1958
Alternate gene names: 167623888
Gene position: 2355951-2353249 (Counterclockwise)
Preceding gene: 167623897
Following gene: 167623883
Centisome position: 45.07
GC content: 48.83
Gene sequence:
>2703_bases ATGAGCCAACGCACTCTTCATAGCCTCTTCAAACCTAAATCAGTTGCCATTATTGGCGCTTCCAACAAGCCCAAACGCGC GGGTAATGTACTGATGAAAAACCTGCTCTCTGGTGGTTTCTCGGGGCCGATTATGCCGGTGACCCCAAAATATGAAGCGG TGATGGGTGTACTCGCTTATCCCAATATTCAAGCCCTGCCACTTATTCCCGATCTCGCGATCATCTGCACCACGGCTGGC AGCGTGCCTGCAATCATCGAAACCTTGGCCCAGTTTGGTTGTAAAGTTGCCATCGTCATGGCATCGGGTATGGCCGATGA ATTTAACGAAGATGGGATCAGTCTGTTAAGTCAGATGCAGCAATTTGCAGACCGATATGGCATGCGGATCTTAGGCCCCA ATAGTTTGGGGATGATTTTGCCCAACCTTGGTTTGAACGCAAGCCTTGCTCACACCAGTGCCCTGCCCGGCAAAATCGCC TTCGTGTCCCAATCTGCCGCTATCTGTACCACGGTATTGGATTGGGCCAACAACAAAGGCATAGGCTTCTCCTCTTTTAT CTCTCTGGGCGATGCTAACGATATCGATTTTGATGAGCTACTGGATTACTTAGGACGAGATTCAAAAACCGATGCAATCT TGCTCTACATCGACTCGGTTAACGAAAAACGTCATTTCCTGTCTGCGGCGCGGGCGGCGTCACGTAATAAACCTATCTTG GTGATTAAGTCAGGCCGAAGTATTGAGGGGGGCAACGCTGCTCAGTTACACACTGGCGGCGTGTCTGGTAACGATGCGGT TTATGAAGCGGCCTTCAGACGAGCGGGTATGCTGCGGGTTAACGATCTTATCGAGTTGTTTGCCGCCGTTGAGACCTTGG CCCACTCAAGACCTTTGCAGGGTGAGCGCCTGGGGATAATCAGTAATGGTGGTGGCCCAGCTGTGCTGGCGTTAGATGAG TTAATCTTAGGTGGAGGCAAACTGCCTGCACTATCGAGTGAAATTTATCAGCGGCTTAACACGCTTTTACCTAAGAGTTG GTCTGGGCAAAATCCGGTGGATATCGGTGGTGATTCAGATGCAAACCGTTATGCACAATCGCTTGAGATCTTAATGGACA GTGACGATCTCGATGCGATCTTAATCTTGCATTCACCTTCAGCGTTAGGCGAAAGCGTCGGGGTCGCCGAAGCGATTGCA GAGACCATCGCCAAGCACCCCAATCGACACAAAATCAATATTCTGACCAACTGGAGTGGCGAAGATTCAGCCTATGAGGC CCGTAAGCATTTTTCAAAGTCTCGCATTCCGACCTATCGCACACCAGAAGGTGCCGTGGGTGCATTTATGCATATGGTTG AATACCGTCGTAACCAAAAGCTACTGCAAGAAGTGCCACAGTCCATTCCTGATAATATTCCCGCCGATTCCACATTGGCC CGAGAGAAGTTACAACAGGCGTTAGACCAAGGTAAAACCGTTTTAGAAACCCATGAGTCACGTGCCATTTTAAGCGCCTA TGGGCTCAATACTATCGATACCTGGTTTGCGACAACCGCGGAGCAAGCCGTTGAGTTTGCAAAGCTTGCTGGTTACCCTA TCGCGTTAAAGCTGCAGTCACCGGATATTCATTATAAGTCCGATATACAAGGCGTGATGCTCAACCTAACTTCCGATCTG GAGGTTGAACATGCAGCGAATGCCATGATTGAGCGGGTGATCTCAGTTAATCCCGATGCACGGATTGAGGGGCTGATCGT TCAGAAAATGGCGCTCACCGCCGGTGCGCAGGAGATAAGAGTCGCAGTAGCTAATGATCCTGTGTTTGGGCCGGCAATTT TGCTAGGTGAAGGTGGCTCTGAATGGGAGCCCACTAAAGATGCGGTCGTTGCCCTGCCACCACTGAATATGACGCTGGCC CGCTATATGGTGATCCAAGCGCTCAAAAACCAGAAGATCAGAGATAGGCATTTGCCACTTGGGTTAAATATGCATGCACT GTGCGTGATGCTGACCCAGATCTCACACTTGATTATTGACTGTCCAGAAATCGCCACTCTCGATTTAAACCCCGTACTGT GCGCTGGTGAGCAGATCACCCTGTTAGATGTAAATATCGGCTTACAACAAGAACCGGTTGATAACGCATCAAGGTTGGCG ATCTCTCCTTACCCGAAAGAACTCGAGGAGATGGTTACCCTCAAGAATGGTAATAAGGTCATGCTACGGCCTATTTTGCC TGAAGATGAACCTAAGCATATGGCTTTTGATAACTCCCTTTCCGATGAGGATAGATACAAGCGTTACTTTGGGGTTCGCT CTAAGATGACCCATGAAGAGATGGCTGTATTAACTCAGATTGACTACGCCAGAGAGATGGCCTTTATTGCCACGGCAATA GGAGACGATGGCGAAGAAACCACCTTAGGTGCCATTCGAGCCTCTATCGATCCTGATAATACCGAAGCCGAATTTGCCAT GGCGGTGCGTAGTAATTATCAAGGCCAGGGTTTAGGAAAACTATTACTTGAGAAACTGGTTAAGTATTACAAGGATAACG ACACGCTTGTGCTGACCGGCTTTACCATGTTTGAAAATAGAAACATGGCCAGTCTTGCTAAACGCCTTGGGTTTACGGTG ACCTTTGACATGGAGGATCGCTTGATTAACATGCATATGGACTTAAAAGCACCGCAAAATTAA
Upstream 100 bases:
>100_bases TTCCTACGCTAAGGCGCCTAGAATTGAACTCGCGCAAGGCCTCTGAAATGAGCATGTTCAAGTCGTTTGGGTATAACATA CTGACTTATAGGATAAGTTC
Downstream 100 bases:
>100_bases GCATAGGCGCACAAACAAAAAGGCCGTTAAGATTTATCTTAACGGCCTTTCTCAATTAACACTGTTTTTAATAATGCCCA ATTTCGAATCCTGTTCTAAA
Product: GCN5-like N-acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MSQRTLHSLFKPKSVAIIGASNKPKRAGNVLMKNLLSGGFSGPIMPVTPKYEAVMGVLAYPNIQALPLIPDLAIICTTAG SVPAIIETLAQFGCKVAIVMASGMADEFNEDGISLLSQMQQFADRYGMRILGPNSLGMILPNLGLNASLAHTSALPGKIA FVSQSAAICTTVLDWANNKGIGFSSFISLGDANDIDFDELLDYLGRDSKTDAILLYIDSVNEKRHFLSAARAASRNKPIL VIKSGRSIEGGNAAQLHTGGVSGNDAVYEAAFRRAGMLRVNDLIELFAAVETLAHSRPLQGERLGIISNGGGPAVLALDE LILGGGKLPALSSEIYQRLNTLLPKSWSGQNPVDIGGDSDANRYAQSLEILMDSDDLDAILILHSPSALGESVGVAEAIA ETIAKHPNRHKINILTNWSGEDSAYEARKHFSKSRIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPADSTLA REKLQQALDQGKTVLETHESRAILSAYGLNTIDTWFATTAEQAVEFAKLAGYPIALKLQSPDIHYKSDIQGVMLNLTSDL EVEHAANAMIERVISVNPDARIEGLIVQKMALTAGAQEIRVAVANDPVFGPAILLGEGGSEWEPTKDAVVALPPLNMTLA RYMVIQALKNQKIRDRHLPLGLNMHALCVMLTQISHLIIDCPEIATLDLNPVLCAGEQITLLDVNIGLQQEPVDNASRLA ISPYPKELEEMVTLKNGNKVMLRPILPEDEPKHMAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAI GDDGEETTLGAIRASIDPDNTEAEFAMAVRSNYQGQGLGKLLLEKLVKYYKDNDTLVLTGFTMFENRNMASLAKRLGFTV TFDMEDRLINMHMDLKAPQN
Sequences:
>Translated_900_residues MSQRTLHSLFKPKSVAIIGASNKPKRAGNVLMKNLLSGGFSGPIMPVTPKYEAVMGVLAYPNIQALPLIPDLAIICTTAG SVPAIIETLAQFGCKVAIVMASGMADEFNEDGISLLSQMQQFADRYGMRILGPNSLGMILPNLGLNASLAHTSALPGKIA FVSQSAAICTTVLDWANNKGIGFSSFISLGDANDIDFDELLDYLGRDSKTDAILLYIDSVNEKRHFLSAARAASRNKPIL VIKSGRSIEGGNAAQLHTGGVSGNDAVYEAAFRRAGMLRVNDLIELFAAVETLAHSRPLQGERLGIISNGGGPAVLALDE LILGGGKLPALSSEIYQRLNTLLPKSWSGQNPVDIGGDSDANRYAQSLEILMDSDDLDAILILHSPSALGESVGVAEAIA ETIAKHPNRHKINILTNWSGEDSAYEARKHFSKSRIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPADSTLA REKLQQALDQGKTVLETHESRAILSAYGLNTIDTWFATTAEQAVEFAKLAGYPIALKLQSPDIHYKSDIQGVMLNLTSDL EVEHAANAMIERVISVNPDARIEGLIVQKMALTAGAQEIRVAVANDPVFGPAILLGEGGSEWEPTKDAVVALPPLNMTLA RYMVIQALKNQKIRDRHLPLGLNMHALCVMLTQISHLIIDCPEIATLDLNPVLCAGEQITLLDVNIGLQQEPVDNASRLA ISPYPKELEEMVTLKNGNKVMLRPILPEDEPKHMAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAI GDDGEETTLGAIRASIDPDNTEAEFAMAVRSNYQGQGLGKLLLEKLVKYYKDNDTLVLTGFTMFENRNMASLAKRLGFTV TFDMEDRLINMHMDLKAPQN >Mature_899_residues SQRTLHSLFKPKSVAIIGASNKPKRAGNVLMKNLLSGGFSGPIMPVTPKYEAVMGVLAYPNIQALPLIPDLAIICTTAGS VPAIIETLAQFGCKVAIVMASGMADEFNEDGISLLSQMQQFADRYGMRILGPNSLGMILPNLGLNASLAHTSALPGKIAF VSQSAAICTTVLDWANNKGIGFSSFISLGDANDIDFDELLDYLGRDSKTDAILLYIDSVNEKRHFLSAARAASRNKPILV IKSGRSIEGGNAAQLHTGGVSGNDAVYEAAFRRAGMLRVNDLIELFAAVETLAHSRPLQGERLGIISNGGGPAVLALDEL ILGGGKLPALSSEIYQRLNTLLPKSWSGQNPVDIGGDSDANRYAQSLEILMDSDDLDAILILHSPSALGESVGVAEAIAE TIAKHPNRHKINILTNWSGEDSAYEARKHFSKSRIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPADSTLAR EKLQQALDQGKTVLETHESRAILSAYGLNTIDTWFATTAEQAVEFAKLAGYPIALKLQSPDIHYKSDIQGVMLNLTSDLE VEHAANAMIERVISVNPDARIEGLIVQKMALTAGAQEIRVAVANDPVFGPAILLGEGGSEWEPTKDAVVALPPLNMTLAR YMVIQALKNQKIRDRHLPLGLNMHALCVMLTQISHLIIDCPEIATLDLNPVLCAGEQITLLDVNIGLQQEPVDNASRLAI SPYPKELEEMVTLKNGNKVMLRPILPEDEPKHMAFDNSLSDEDRYKRYFGVRSKMTHEEMAVLTQIDYAREMAFIATAIG DDGEETTLGAIRASIDPDNTEAEFAMAVRSNYQGQGLGKLLLEKLVKYYKDNDTLVLTGFTMFENRNMASLAKRLGFTVT FDMEDRLINMHMDLKAPQN
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=895, Percent_Identity=51.9553072625698, Blast_Score=917, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR011761 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR016102 [H]
Pfam domain/function: PF00583 Acetyltransf_1 [H]
EC number: NA
Molecular weight: Translated: 97964; Mature: 97832
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQRTLHSLFKPKSVAIIGASNKPKRAGNVLMKNLLSGGFSGPIMPVTPKYEAVMGVLAY CCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC PNIQALPLIPDLAIICTTAGSVPAIIETLAQFGCKVAIVMASGMADEFNEDGISLLSQMQ CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCHHCCCHHHHHHHHHH QFADRYGMRILGPNSLGMILPNLGLNASLAHTSALPGKIAFVSQSAAICTTVLDWANNKG HHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCC IGFSSFISLGDANDIDFDELLDYLGRDSKTDAILLYIDSVNEKRHFLSAARAASRNKPIL CCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE VIKSGRSIEGGNAAQLHTGGVSGNDAVYEAAFRRAGMLRVNDLIELFAAVETLAHSRPLQ EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GERLGIISNGGGPAVLALDELILGGGKLPALSSEIYQRLNTLLPKSWSGQNPVDIGGDSD CCEEEEEECCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC ANRYAQSLEILMDSDDLDAILILHSPSALGESVGVAEAIAETIAKHPNRHKINILTNWSG HHHHHHHHHHEECCCCCCEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCC EDSAYEARKHFSKSRIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPADSTLA CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH REKLQQALDQGKTVLETHESRAILSAYGLNTIDTWFATTAEQAVEFAKLAGYPIALKLQS HHHHHHHHHCCCCEEHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC PDIHYKSDIQGVMLNLTSDLEVEHAANAMIERVISVNPDARIEGLIVQKMALTAGAQEIR CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEE VAVANDPVFGPAILLGEGGSEWEPTKDAVVALPPLNMTLARYMVIQALKNQKIRDRHLPL EEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHCCCCC GLNMHALCVMLTQISHLIIDCPEIATLDLNPVLCAGEQITLLDVNIGLQQEPVDNASRLA CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCEEEEEEEECCCCCCCCCCCCCEE ISPYPKELEEMVTLKNGNKVMLRPILPEDEPKHMAFDNSLSDEDRYKRYFGVRSKMTHEE ECCCHHHHHHHHEECCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCHHH MAVLTQIDYAREMAFIATAIGDDGEETTLGAIRASIDPDNTEAEFAMAVRSNYQGQGLGK HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEECCCCCCCHHHHHHHHHCCCCCCCHHH LLLEKLVKYYKDNDTLVLTGFTMFENRNMASLAKRLGFTVTFDMEDRLINMHMDLKAPQN HHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCC >Mature Secondary Structure SQRTLHSLFKPKSVAIIGASNKPKRAGNVLMKNLLSGGFSGPIMPVTPKYEAVMGVLAY CCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC PNIQALPLIPDLAIICTTAGSVPAIIETLAQFGCKVAIVMASGMADEFNEDGISLLSQMQ CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCHHCCCHHHHHHHHHH QFADRYGMRILGPNSLGMILPNLGLNASLAHTSALPGKIAFVSQSAAICTTVLDWANNKG HHHHHCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCC IGFSSFISLGDANDIDFDELLDYLGRDSKTDAILLYIDSVNEKRHFLSAARAASRNKPIL CCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEE VIKSGRSIEGGNAAQLHTGGVSGNDAVYEAAFRRAGMLRVNDLIELFAAVETLAHSRPLQ EEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC GERLGIISNGGGPAVLALDELILGGGKLPALSSEIYQRLNTLLPKSWSGQNPVDIGGDSD CCEEEEEECCCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC ANRYAQSLEILMDSDDLDAILILHSPSALGESVGVAEAIAETIAKHPNRHKINILTNWSG HHHHHHHHHHEECCCCCCEEEEEECCHHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCC EDSAYEARKHFSKSRIPTYRTPEGAVGAFMHMVEYRRNQKLLQEVPQSIPDNIPADSTLA CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH REKLQQALDQGKTVLETHESRAILSAYGLNTIDTWFATTAEQAVEFAKLAGYPIALKLQS HHHHHHHHHCCCCEEHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC PDIHYKSDIQGVMLNLTSDLEVEHAANAMIERVISVNPDARIEGLIVQKMALTAGAQEIR CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEE VAVANDPVFGPAILLGEGGSEWEPTKDAVVALPPLNMTLARYMVIQALKNQKIRDRHLPL EEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHCCCCC GLNMHALCVMLTQISHLIIDCPEIATLDLNPVLCAGEQITLLDVNIGLQQEPVDNASRLA CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCEEEEEEEECCCCCCCCCCCCCEE ISPYPKELEEMVTLKNGNKVMLRPILPEDEPKHMAFDNSLSDEDRYKRYFGVRSKMTHEE ECCCHHHHHHHHEECCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCHHH MAVLTQIDYAREMAFIATAIGDDGEETTLGAIRASIDPDNTEAEFAMAVRSNYQGQGLGK HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEECCCCCCCHHHHHHHHHCCCCCCCHHH LLLEKLVKYYKDNDTLVLTGFTMFENRNMASLAKRLGFTVTFDMEDRLINMHMDLKAPQN HHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]