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The map label for this gene is ygcF [H]

Identifier: 167623866

GI number: 167623866

Start: 2328101

End: 2328769

Strand: Direct

Name: ygcF [H]

Synonym: Shal_1936

Alternate gene names: 167623866

Gene position: 2328101-2328769 (Clockwise)

Preceding gene: 167623863

Following gene: 167623868

Centisome position: 44.54

GC content: 42.75

Gene sequence:

>669_bases
ATGAAATATCCAGTGAATGAAGTATTTGAAACAATTCAAGGTGAGGGGACTTTTACGGGAGTACCAGCCGTTTTTGTTAG
ACTTCAGGGCTGCCCTGTTGGTTGCTCTTGGTGTGACACTAAGCAGACGTGGGAATTGCTAGAGGCAAATCACGTTGCTA
AAGAGCTTGTGATCCAAGTTGACGGTACTATCGGCCGTTGGTCGGAGCTTAGCGCTGAAGAATTGGTTAATGCCTTTAAA
GATAAAGGCTTTAATGCAAAACATATCGTGATCACAGGTGGTGAACCTTGTTTATATGATTTGACAGAGTTAACTCAATA
TCTTCATAGCCAAGGTTACCAAACGCAGATTGAAACCAGTGGTACGTTTGATGTGCTTTGTCACGCAGATACTTGGGTGA
CAGTATCACCTAAGGTCAATATGAAAGGTGGTTATAAAGTACTTGCCCAAGCGCTAAACCGGGCCAATGAGATTAAACAC
CCGATAGCAACTCAAAATCACATTGATGAGCTTGATGAGCTGTTGGAAGGTATCGACTTAACCGATAAAACGGTTTGCTT
GCAGCCTATTAGTCAAAAGGCCCGTGCGACAGAGTTGGCAATGTCTACCTGTATCGCACGTAACTGGCGCTTATCGATTC
AAACGCATAAATATTTAGATATCGATTAA

Upstream 100 bases:

>100_bases
AAGAGCTATTAGTTTAGCGCAGCCGTGAATGCTTTTAAACTACTTGCGACTCACGTTAAAATCCTCTATAAAGTGCCCCG
GTTAACCAAGAGGTAAGATA

Downstream 100 bases:

>100_bases
CAAAATCGACAATGTTTTATGAAAAAGCCCTTGGATTTAATTATCTCAAGGGCTTTTCTGTATCACTACTGATGAGCTAG
TTACTTATCGTTATACTCAC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQVDGTIGRWSELSAEELVNAFK
DKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATQNHIDELDELLEGIDLTDKTVCLQPISQKARATELAMSTCIARNWRLSIQTHKYLDID

Sequences:

>Translated_222_residues
MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQVDGTIGRWSELSAEELVNAFK
DKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATQNHIDELDELLEGIDLTDKTVCLQPISQKARATELAMSTCIARNWRLSIQTHKYLDID
>Mature_222_residues
MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQVDGTIGRWSELSAEELVNAFK
DKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQIETSGTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATQNHIDELDELLEGIDLTDKTVCLQPISQKARATELAMSTCIARNWRLSIQTHKYLDID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=57.6576576576577, Blast_Score=276, Evalue=6e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24812; Mature: 24812

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQV
CCCCHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEE
DGTIGRWSELSAEELVNAFKDKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQIETS
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATQNHIDELDELLEGIDL
CCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
TDKTVCLQPISQKARATELAMSTCIARNWRLSIQTHKYLDID
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEECC
>Mature Secondary Structure
MKYPVNEVFETIQGEGTFTGVPAVFVRLQGCPVGCSWCDTKQTWELLEANHVAKELVIQV
CCCCHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEE
DGTIGRWSELSAEELVNAFKDKGFNAKHIVITGGEPCLYDLTELTQYLHSQGYQTQIETS
CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
GTFDVLCHADTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATQNHIDELDELLEGIDL
CCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
TDKTVCLQPISQKARATELAMSTCIARNWRLSIQTHKYLDID
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]