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The map label for this gene is rnfC [H]

Identifier: 167623859

GI number: 167623859

Start: 2317128

End: 2319560

Strand: Reverse

Name: rnfC [H]

Synonym: Shal_1929

Alternate gene names: 167623859

Gene position: 2319560-2317128 (Counterclockwise)

Preceding gene: 167623860

Following gene: 167623858

Centisome position: 44.38

GC content: 49.36

Gene sequence:

>2433_bases
GTGTTAACTTTATTAGAGCAAATTGATAAAGGAACGCTTTGGCGCTCACATGGTGGCGTTCACCCTCCTGAATTAAAAGC
ATTATCTAACAAGAGCCGAATTGGACAACTGCCACTGGCAAGCCAATACATTTTGCCACTGACACAAGTTGGTGACAGTG
CGCTGCTCACGGTTAAAGTAGGCGATCGCGTCCTAAAAGGTCAAAGCCTGACTAAGGGAACAAGTTTCGCTTACAGTCCA
GTACATGCGCCGACGTCAGGTTTTATCACCCAGATTCAACCGATGCCAAGCAACCATGCATCAGGCATTGCGGTACTGAG
TTGTGTTATCGAGCCAGACGGTCTAGATGCATCGGTAGAACTTATCTCTTCCGAAGTTGGCACTTTGAGCAATCAGGATA
TTTTAGCCAAAATTCAACAAGCTGGTATCGCAGGACTAGGTGGAGCCGCTTTTCCAACCCACATCAAGCTTAGCCCCGCC
AGTGATATCGAGCTGGTTATTATCAACGGTATCGAGTGCGAACCCTATATCACCTCAGACGATCGCCTGATGCGTGAGCA
TAGCGATGAGATCCTTTCGGGCATTGCAATTATCCAGAAGCTGCTCAAGCCAAAGCGGATCATTATCGCCATCGAAGATA
ACAAACCCGAAGCGATTGAGGCCATGCAACATGCGCTTAATCGCAGCGAGTTAGCAACAGATAGCGCCAGGATCACTGCT
GTTCCCACCAAGTACCCATCGGGTGGTGAGAAACAGTTAATTCAGATCTTAACTGGACAAGAGGTGCCATCGGGCTCCAT
TCCTGCTCAACTTGGCATGTTAGTGCAAAACGTCGGTACGGCTTACGCTATTCATGATGCTGTCATTAATGGCCATGCAC
TAACTAGCCGAGTGGTAACCGTAACGGGTCTAAACAGTCAAACGCCGGGTAACTATTGGATGCCAGTCGGTACGCCAATA
AAGCACATTCTCAACACGCTTGGTTTTAGTGGTGACTTAGCTAACGACAAAGTCATTATTGGTGGCCCAATGATGGGGTA
TGCATTACCTAACGTACAGGCTCCTGTTTTGAAGGGAACCAACTGCATACTCCTTCCAAGTAATGAAGAGATAGCTGATG
ACACGGTAGAGAAACCCTGTATTCGCTGTGGAGAGTGCGCAGTTGCCTGCCCTGCTCTTTTATTACCACAGCAACTGTTT
TGGCATGCAAAAGCCGAGGAGTACGATAAGGCTGCTAGCTTTAACCTACACGATTGCATCGAATGTGGTTGCTGTAGTTT
CGTATGTCCAAGCGATATCCCACTGGTCGAGTATTACCGTATCGCTAAATCGGCTATACGCACTCAAACCGAAGAAAAGA
AACAAGCCGACTTTGCTAAACAGCGTTTTGAAGCAAGACTACAGCGCTTAGAAGAAGAAAAACTGGCGCGTGAGGCCAAA
GCCAAAGAAGCGGCTGAGCGACGTAAGACGACGATGTCTAGCGGCGATCGAGACGCTGTGGCTGAAGCGATGGCGCGTAT
CAAGGCTAAGAAAGCTGCCGAAAGCCAGCAAGCTGAGACAACAGCAACTGCAGACGATAAGAAATCACAAGTTGCAGCAG
CGATTGCCCGAGCTAAAGCTAAGAAAAGCAATACAAGCACTCCGGTTGATACCGCTTCAACAACTGACGCGCAACCCGCT
ACTGATAAGAAGGCTCAAGTAGCCGCTGCGATTGCCCGTGCTAAAGCGAAGAAGACGGCGCAAGCAGGTTCGACTGAGGC
CGATGCTAAAGTGGAATTAAATGCTGCAGCTGCCGATACTCCCGTTTCCGATAAAAAAGCCCAAATTGCCGCGGCTATTG
CCCGTGCTAAAGCGAAGAAAGCGGCGCAAGCTGGCTCGCATGAGGCCGATGCTAAAGCGGAGATTAATCCTGCAGCTGCC
GATACCACTGTCACTGACAAGAAAGCACAAGTCGCGGCAGCAATTGCGCGCGCGAAAGCCAAGAAGGCATCACTAGCAGC
CAAAAACGATGACGCAGTACTGCAGCTTAACGGCGAGGTTGACACAGCCACGGATGTTAGCGAGAAAACCGACTCTGATA
CCTCTGTAATCGAGGCTTCTATCACGGGCTCGGCTGATGAAGCAAAAAAAGCCCGCATCGCCGCTGCAGTTGCTAAAGCC
AAGGCTAAAAAGCAGTCTCAAGGCGCTGAGCTTCAACCTAGTCAAACCGCTCATACGGAAACCACAGATGCTCAAAACGC
GGATACTGAAACCACAGATGCTCAAACCTTTAACACTGATACTTCAGTAACTGAGTCGGTCGAGCCAGAGCTTGCTGAGA
CAATGCCTACCGAAACCCTGTCAGCTGAAGATGCTAAAAAAGCCCGCATCGCTGCTGCAGTCGCCAAGGCAAAAGCAAAA
AAAGCTCAAGCACAATTGCAGGAAAAGGAATAA

Upstream 100 bases:

>100_bases
CAGTCGATTGTATTGATATGCTACCCGTAGCACAAACCACCAAGACTTGGGATTGGCAGCTTAATGCCATCCCCGTAAAA
CAGTTGCAAGAGGATAAGCC

Downstream 100 bases:

>100_bases
ACCATGGCGTTTAAGTTAGCCTCATCACCTCATTTAAAGGTGCAACTACAAACCCAAACCGTCATGCGCCGAGTGATTTT
ATGTGCATTACCTGGTATTG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 810; Mature: 810

Protein sequence:

>810_residues
MLTLLEQIDKGTLWRSHGGVHPPELKALSNKSRIGQLPLASQYILPLTQVGDSALLTVKVGDRVLKGQSLTKGTSFAYSP
VHAPTSGFITQIQPMPSNHASGIAVLSCVIEPDGLDASVELISSEVGTLSNQDILAKIQQAGIAGLGGAAFPTHIKLSPA
SDIELVIINGIECEPYITSDDRLMREHSDEILSGIAIIQKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELATDSARITA
VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVINGHALTSRVVTVTGLNSQTPGNYWMPVGTPI
KHILNTLGFSGDLANDKVIIGGPMMGYALPNVQAPVLKGTNCILLPSNEEIADDTVEKPCIRCGECAVACPALLLPQQLF
WHAKAEEYDKAASFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK
AKEAAERRKTTMSSGDRDAVAEAMARIKAKKAAESQQAETTATADDKKSQVAAAIARAKAKKSNTSTPVDTASTTDAQPA
TDKKAQVAAAIARAKAKKTAQAGSTEADAKVELNAAAADTPVSDKKAQIAAAIARAKAKKAAQAGSHEADAKAEINPAAA
DTTVTDKKAQVAAAIARAKAKKASLAAKNDDAVLQLNGEVDTATDVSEKTDSDTSVIEASITGSADEAKKARIAAAVAKA
KAKKQSQGAELQPSQTAHTETTDAQNADTETTDAQTFNTDTSVTESVEPELAETMPTETLSAEDAKKARIAAAVAKAKAK
KAQAQLQEKE

Sequences:

>Translated_810_residues
MLTLLEQIDKGTLWRSHGGVHPPELKALSNKSRIGQLPLASQYILPLTQVGDSALLTVKVGDRVLKGQSLTKGTSFAYSP
VHAPTSGFITQIQPMPSNHASGIAVLSCVIEPDGLDASVELISSEVGTLSNQDILAKIQQAGIAGLGGAAFPTHIKLSPA
SDIELVIINGIECEPYITSDDRLMREHSDEILSGIAIIQKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELATDSARITA
VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVINGHALTSRVVTVTGLNSQTPGNYWMPVGTPI
KHILNTLGFSGDLANDKVIIGGPMMGYALPNVQAPVLKGTNCILLPSNEEIADDTVEKPCIRCGECAVACPALLLPQQLF
WHAKAEEYDKAASFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK
AKEAAERRKTTMSSGDRDAVAEAMARIKAKKAAESQQAETTATADDKKSQVAAAIARAKAKKSNTSTPVDTASTTDAQPA
TDKKAQVAAAIARAKAKKTAQAGSTEADAKVELNAAAADTPVSDKKAQIAAAIARAKAKKAAQAGSHEADAKAEINPAAA
DTTVTDKKAQVAAAIARAKAKKASLAAKNDDAVLQLNGEVDTATDVSEKTDSDTSVIEASITGSADEAKKARIAAAVAKA
KAKKQSQGAELQPSQTAHTETTDAQNADTETTDAQTFNTDTSVTESVEPELAETMPTETLSAEDAKKARIAAAVAKAKAK
KAQAQLQEKE
>Mature_810_residues
MLTLLEQIDKGTLWRSHGGVHPPELKALSNKSRIGQLPLASQYILPLTQVGDSALLTVKVGDRVLKGQSLTKGTSFAYSP
VHAPTSGFITQIQPMPSNHASGIAVLSCVIEPDGLDASVELISSEVGTLSNQDILAKIQQAGIAGLGGAAFPTHIKLSPA
SDIELVIINGIECEPYITSDDRLMREHSDEILSGIAIIQKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELATDSARITA
VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVINGHALTSRVVTVTGLNSQTPGNYWMPVGTPI
KHILNTLGFSGDLANDKVIIGGPMMGYALPNVQAPVLKGTNCILLPSNEEIADDTVEKPCIRCGECAVACPALLLPQQLF
WHAKAEEYDKAASFNLHDCIECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK
AKEAAERRKTTMSSGDRDAVAEAMARIKAKKAAESQQAETTATADDKKSQVAAAIARAKAKKSNTSTPVDTASTTDAQPA
TDKKAQVAAAIARAKAKKTAQAGSTEADAKVELNAAAADTPVSDKKAQIAAAIARAKAKKAAQAGSHEADAKAEINPAAA
DTTVTDKKAQVAAAIARAKAKKASLAAKNDDAVLQLNGEVDTATDVSEKTDSDTSVIEASITGSADEAKKARIAAAVAKA
KAKKQSQGAELQPSQTAHTETTDAQNADTETTDAQTFNTDTSVTESVEPELAETMPTETLSAEDAKKARIAAAVAKAKAK
KAQAQLQEKE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=563, Percent_Identity=45.8259325044405, Blast_Score=490, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 85437; Mature: 85437

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLLEQIDKGTLWRSHGGVHPPELKALSNKSRIGQLPLASQYILPLTQVGDSALLTVKV
CCCHHHHHCCCCEECCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHCCCCEEEEEEE
GDRVLKGQSLTKGTSFAYSPVHAPTSGFITQIQPMPSNHASGIAVLSCVIEPDGLDASVE
CCCHHCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCHHHH
LISSEVGTLSNQDILAKIQQAGIAGLGGAAFPTHIKLSPASDIELVIINGIECEPYITSD
HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCEECCC
DRLMREHSDEILSGIAIIQKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELATDSARITA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVINGHALTSRVVT
ECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHCEEEE
VTGLNSQTPGNYWMPVGTPIKHILNTLGFSGDLANDKVIIGGPMMGYALPNVQAPVLKGT
EECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCCCCCEECCC
NCILLPSNEEIADDTVEKPCIRCGECAVACPALLLPQQLFWHAKAEEYDKAASFNLHDCI
CEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
ECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEAAERRKTTMSSGDRDAVAEAMARIKAKKAAESQQAETTATADDKKSQVAAAIARAKA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KKSNTSTPVDTASTTDAQPATDKKAQVAAAIARAKAKKTAQAGSTEADAKVELNAAAADT
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
PVSDKKAQIAAAIARAKAKKAAQAGSHEADAKAEINPAAADTTVTDKKAQVAAAIARAKA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KKASLAAKNDDAVLQLNGEVDTATDVSEKTDSDTSVIEASITGSADEAKKARIAAAVAKA
HHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
KAKKQSQGAELQPSQTAHTETTDAQNADTETTDAQTFNTDTSVTESVEPELAETMPTETL
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCHHHHHCCCCCC
SAEDAKKARIAAAVAKAKAKKAQAQLQEKE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTLLEQIDKGTLWRSHGGVHPPELKALSNKSRIGQLPLASQYILPLTQVGDSALLTVKV
CCCHHHHHCCCCEECCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHCCCCEEEEEEE
GDRVLKGQSLTKGTSFAYSPVHAPTSGFITQIQPMPSNHASGIAVLSCVIEPDGLDASVE
CCCHHCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCHHHH
LISSEVGTLSNQDILAKIQQAGIAGLGGAAFPTHIKLSPASDIELVIINGIECEPYITSD
HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCEECCC
DRLMREHSDEILSGIAIIQKLLKPKRIIIAIEDNKPEAIEAMQHALNRSELATDSARITA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
VPTKYPSGGEKQLIQILTGQEVPSGSIPAQLGMLVQNVGTAYAIHDAVINGHALTSRVVT
ECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHCEEEE
VTGLNSQTPGNYWMPVGTPIKHILNTLGFSGDLANDKVIIGGPMMGYALPNVQAPVLKGT
EECCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCCCCCEECCC
NCILLPSNEEIADDTVEKPCIRCGECAVACPALLLPQQLFWHAKAEEYDKAASFNLHDCI
CEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
ECGCCSFVCPSDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEEKLAREAK
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKEAAERRKTTMSSGDRDAVAEAMARIKAKKAAESQQAETTATADDKKSQVAAAIARAKA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
KKSNTSTPVDTASTTDAQPATDKKAQVAAAIARAKAKKTAQAGSTEADAKVELNAAAADT
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
PVSDKKAQIAAAIARAKAKKAAQAGSHEADAKAEINPAAADTTVTDKKAQVAAAIARAKA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KKASLAAKNDDAVLQLNGEVDTATDVSEKTDSDTSVIEASITGSADEAKKARIAAAVAKA
HHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
KAKKQSQGAELQPSQTAHTETTDAQNADTETTDAQTFNTDTSVTESVEPELAETMPTETL
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHCCCCHHHHHCCCCCC
SAEDAKKARIAAAVAKAKAKKAQAQLQEKE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]