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The map label for this gene is rnfD [H]

Identifier: 167623858

GI number: 167623858

Start: 2316072

End: 2317124

Strand: Reverse

Name: rnfD [H]

Synonym: Shal_1928

Alternate gene names: 167623858

Gene position: 2317124-2316072 (Counterclockwise)

Preceding gene: 167623859

Following gene: 167623857

Centisome position: 44.33

GC content: 46.25

Gene sequence:

>1053_bases
ATGGCGTTTAAGTTAGCCTCATCACCTCATTTAAAGGTGCAACTACAAACCCAAACCGTCATGCGCCGAGTGATTTTATG
TGCATTACCTGGTATTGCGACCCAATGCTATTTCTTTGGTTGGGGCGTATTAATCCAAGTCACGTTGGCAATCATCGTCG
CACTCGCTGCCGAATCTGCAGTTTTAGCGCTGCGTAAAAGAGCCATATTACCGACAATCAGTGATAATAGTGCAGTATTA
ACCGCTGTATTAATTGGTGTTGCAATTCCACCTATTGCACCTTGGTGGTTAGTTGTTATCGGCACTTTGTTTGCGATTGT
TCTTGTTAAACAGCTCTATGGTGGCCTTGGGCAAAATATTTTCAACCCAGCCATGGCAGCCTACGTTATGCTGCTTATCT
CGTTTCCAGTACAGATGACAAGTTGGTCCATCCCAACGGCTATTGCCCAAAATCCAATGGATATTGGCTTAACGCTACAG
GCCATTTTCGGCTCGATGACAGCTGAGCAGTTAAATCTGTATAAACTCGGCTTTGACGGTATCGCGATGGCGACACCACT
GGATACAGCAAAAACAGATCTAGCGCTAGGTTTAACCATGACCGAAAGCTTAGGGAAATCAATATTCTCTAACGGCTTTG
GGGTCGGTTGGTTCTGGGTCAATATGGCCTATCTGGCTGGCGGTTTAGTGATGCTAAAACTAAAAGTCATCCGTTGGCAC
ATCAGTGCGGCTATTTTAGGCTCACTCTTTATCTGTAGCAGTTTTGGTTACCTGTTAAGTCCCGACACTCATGTTGGTCC
ATTGATGCAGCTGTTTTCTGGTGCGACCATGATTGCGGCATTTTTTATTGCAACCGATCCTGTCACTGCAGCGACAAGTG
TTCGTGGCCGACTCATTTTCGGTGCGATTATTGGCGTGCTTGTCTATGTTATTCGAACCTTTGGCGGCTACCCAGATGCT
TTTGCTTTTGCCGTGCTACTGGCTAACCTTTGTGCGCCGTTTATTGACTACTATGTCAAGCCTCGCACCTATGGACACCG
TACTGGCAACTGA

Upstream 100 bases:

>100_bases
CCTGTCAGCTGAAGATGCTAAAAAAGCCCGCATCGCTGCTGCAGTCGCCAAGGCAAAAGCAAAAAAAGCTCAAGCACAAT
TGCAGGAAAAGGAATAAACC

Downstream 100 bases:

>100_bases
GTATAAAGAGAGTTTACTTTGAAAAAATCTATGTTAAAGAATGGTTTGTTACTCGGTCTATTTGCACTTTTATGTACTGG
ACTTGTGGCTGTAGTAAACA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MAFKLASSPHLKVQLQTQTVMRRVILCALPGIATQCYFFGWGVLIQVTLAIIVALAAESAVLALRKRAILPTISDNSAVL
TAVLIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQ
AIFGSMTAEQLNLYKLGFDGIAMATPLDTAKTDLALGLTMTESLGKSIFSNGFGVGWFWVNMAYLAGGLVMLKLKVIRWH
ISAAILGSLFICSSFGYLLSPDTHVGPLMQLFSGATMIAAFFIATDPVTAATSVRGRLIFGAIIGVLVYVIRTFGGYPDA
FAFAVLLANLCAPFIDYYVKPRTYGHRTGN

Sequences:

>Translated_350_residues
MAFKLASSPHLKVQLQTQTVMRRVILCALPGIATQCYFFGWGVLIQVTLAIIVALAAESAVLALRKRAILPTISDNSAVL
TAVLIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQ
AIFGSMTAEQLNLYKLGFDGIAMATPLDTAKTDLALGLTMTESLGKSIFSNGFGVGWFWVNMAYLAGGLVMLKLKVIRWH
ISAAILGSLFICSSFGYLLSPDTHVGPLMQLFSGATMIAAFFIATDPVTAATSVRGRLIFGAIIGVLVYVIRTFGGYPDA
FAFAVLLANLCAPFIDYYVKPRTYGHRTGN
>Mature_349_residues
AFKLASSPHLKVQLQTQTVMRRVILCALPGIATQCYFFGWGVLIQVTLAIIVALAAESAVLALRKRAILPTISDNSAVLT
AVLIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNIFNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQA
IFGSMTAEQLNLYKLGFDGIAMATPLDTAKTDLALGLTMTESLGKSIFSNGFGVGWFWVNMAYLAGGLVMLKLKVIRWHI
SAAILGSLFICSSFGYLLSPDTHVGPLMQLFSGATMIAAFFIATDPVTAATSVRGRLIFGAIIGVLVYVIRTFGGYPDAF
AFAVLLANLCAPFIDYYVKPRTYGHRTGN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=55.6818181818182, Blast_Score=390, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 37581; Mature: 37450

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKLASSPHLKVQLQTQTVMRRVILCALPGIATQCYFFGWGVLIQVTLAIIVALAAESA
CCEECCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALRKRAILPTISDNSAVLTAVLIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNI
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQAIFGSMTAEQLNLYKLGFDG
HHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHEEEECCCC
IAMATPLDTAKTDLALGLTMTESLGKSIFSNGFGVGWFWVNMAYLAGGLVMLKLKVIRWH
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
ISAAILGSLFICSSFGYLLSPDTHVGPLMQLFSGATMIAAFFIATDPVTAATSVRGRLIF
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GAIIGVLVYVIRTFGGYPDAFAFAVLLANLCAPFIDYYVKPRTYGHRTGN
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AFKLASSPHLKVQLQTQTVMRRVILCALPGIATQCYFFGWGVLIQVTLAIIVALAAESA
CEECCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLALRKRAILPTISDNSAVLTAVLIGVAIPPIAPWWLVVIGTLFAIVLVKQLYGGLGQNI
HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVMLLISFPVQMTSWSIPTAIAQNPMDIGLTLQAIFGSMTAEQLNLYKLGFDG
HHHHHHHHHHHHHHCCHHHCCCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHEEEECCCC
IAMATPLDTAKTDLALGLTMTESLGKSIFSNGFGVGWFWVNMAYLAGGLVMLKLKVIRWH
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
ISAAILGSLFICSSFGYLLSPDTHVGPLMQLFSGATMIAAFFIATDPVTAATSVRGRLIF
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GAIIGVLVYVIRTFGGYPDAFAFAVLLANLCAPFIDYYVKPRTYGHRTGN
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA