Click here to switch to the map view.

The map label for this gene is rnfE [H]

Identifier: 167623856

GI number: 167623856

Start: 2314726

End: 2315421

Strand: Reverse

Name: rnfE [H]

Synonym: Shal_1926

Alternate gene names: 167623856

Gene position: 2315421-2314726 (Counterclockwise)

Preceding gene: 167623857

Following gene: 167623855

Centisome position: 44.3

GC content: 44.68

Gene sequence:

>696_bases
ATGAGTGATTATAAAGAGCTAGCCAAACAAGGTCTTTGGAAAAATAACCCCGGACTTGTACAGCTTCTAGGGCTGTGCCC
TCTGCTTGCGGTTACCGCAACCTTAACCAACGCCTTAGGTCTAGGCCTCGCGACCATGTTGGTATTGATTGGCTCCAACA
TCTTGGTGTCACTCGTTCGTGACTTTGTACCTAAAGAGATCCGTATCCCGGTGTTTGTGATGATCATCGCTGCGCTTGTG
ACAACGGTACAGCTACTTATCAACGCTTACGCTTATGGACTATACCTATCGCTTGGTATTTTCTTACCACTTATCGTCAC
AAACTGTGTGATAATCGGTCGTGCTGAGGCTTTTGCGTCTCGCAATAATGTGACCAAATCAGCCTTTGACGGGCTGATGA
TGGGCTTAGGTTTTACATTAGTTTTATCAATTTTAGGCGCAACGAGAGAAATATTAGGTCAAGGCACATTATTTTATGGC
GCTGAACAGCTACTCGGTGAATGGGCTAAGTCATTAACCATTCAACTCTGGCAAGTTGATACTAATTTCTTGTTAGCCAT
GCTACCACCAGGCGCCTTTATTGGTATGGGTCTGCTGATTGCGCTTAAGAATGTCATTGATCAACACTTGGCATCTAAGC
AACCTAAAACAGAGCAAGAAGCCCCTACTAGAGCTCGGATCACCAAAGTTAATTAG

Upstream 100 bases:

>100_bases
CGCCACGGGCATATGTAAAAGCAGTGAAAAATGCCGTTAGCTTTTTTAATGCTAACAAGGCACAACTGTTATCGACACCT
GCCAATTGCGAGGTTGCAAA

Downstream 100 bases:

>100_bases
CCCTTGATATAACGTGTATTGATATAATAAGCGGCGTTATAAAACTAGCGTGAGCTAGTAGATAGTAACGACGACACTGA
CAAATGAGACAATAACAACA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSDYKELAKQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATMLVLIGSNILVSLVRDFVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNNVTKSAFDGLMMGLGFTLVLSILGATREILGQGTLFYG
AEQLLGEWAKSLTIQLWQVDTNFLLAMLPPGAFIGMGLLIALKNVIDQHLASKQPKTEQEAPTRARITKVN

Sequences:

>Translated_231_residues
MSDYKELAKQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATMLVLIGSNILVSLVRDFVPKEIRIPVFVMIIAALV
TTVQLLINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNNVTKSAFDGLMMGLGFTLVLSILGATREILGQGTLFYG
AEQLLGEWAKSLTIQLWQVDTNFLLAMLPPGAFIGMGLLIALKNVIDQHLASKQPKTEQEAPTRARITKVN
>Mature_230_residues
SDYKELAKQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATMLVLIGSNILVSLVRDFVPKEIRIPVFVMIIAALVT
TVQLLINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFASRNNVTKSAFDGLMMGLGFTLVLSILGATREILGQGTLFYGA
EQLLGEWAKSLTIQLWQVDTNFLLAMLPPGAFIGMGLLIALKNVIDQHLASKQPKTEQEAPTRARITKVN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=210, Percent_Identity=61.4285714285714, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=35.8974358974359, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24954; Mature: 24823

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYKELAKQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATMLVLIGSNILVSLVR
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
DFVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNVTKSAFDGLMMGLGFTLVLSILGATREILGQGTLFYGAEQLLGEWAKSLTIQLWQVD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEC
TNFLLAMLPPGAFIGMGLLIALKNVIDQHLASKQPKTEQEAPTRARITKVN
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure 
SDYKELAKQGLWKNNPGLVQLLGLCPLLAVTATLTNALGLGLATMLVLIGSNILVSLVR
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
DFVPKEIRIPVFVMIIAALVTTVQLLINAYAYGLYLSLGIFLPLIVTNCVIIGRAEAFAS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RNNVTKSAFDGLMMGLGFTLVLSILGATREILGQGTLFYGAEQLLGEWAKSLTIQLWQVD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEC
TNFLLAMLPPGAFIGMGLLIALKNVIDQHLASKQPKTEQEAPTRARITKVN
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA