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The map label for this gene is nth [H]

Identifier: 167623855

GI number: 167623855

Start: 2313964

End: 2314605

Strand: Reverse

Name: nth [H]

Synonym: Shal_1925

Alternate gene names: 167623855

Gene position: 2314605-2313964 (Counterclockwise)

Preceding gene: 167623856

Following gene: 167623854

Centisome position: 44.28

GC content: 45.17

Gene sequence:

>642_bases
ATGAACGCTGAAAAACGCCGCTTAATTCTGGAAAGGTTGAGAGAAAACAATCCTCATCCAGAAACTGAACTCAACTTCTC
GAGCCCATTTGAGCTGCTGGTTGCAGTAACATTATCCGCGCAGGCAACTGATGTCAGTGTCAATAAGGCGACCGATAAAC
TCTTTCCGGTCGCCAACACGGCACAAGCGATTGCAGCCTTAGGTGTTGAAGGTTTAAAGCCTTATATCAAGACCATTGGC
CTGTATAACAACAAGGCCATAAATGTAGTCAAAGCCTGTGAGATCTTAGTCGAAAAATATAACGGCGAAGTGCCTGAAGA
CAGAGAGGCGCTTGAGTCGCTTCCTGGAGTTGGCAGAAAAACGGCAAACGTGGTACTCAATACTGCTTTTGGTTGGCCTA
CCATCGCTGTAGACACCCATATTGATAGGGTTTGTAATCGAACTAAGTTTGCTATCGGTAAGAATGTCGTTGAAGTGGAA
AAGAAGCTGTTAAAGGTGGTTCCTGCTGAGTTTAAGGTCGATGTGCATCACTGGCTTATCTTGCATGGTCGTTATACCTG
TATCGCGCGAAAACCTCGCTGCGGGAGTTGTATCATCGAAGATCTATGTGAATTCAAGGATAAAATCTACCCTGAGGAGT
AA

Upstream 100 bases:

>100_bases
GATATAATAAGCGGCGTTATAAAACTAGCGTGAGCTAGTAGATAGTAACGACGACACTGACAAATGAGACAATAACAACA
ATTAGTACGGATAATGGACA

Downstream 100 bases:

>100_bases
CCCGCTTAGCTTAAACAAATCTAGGCTGACGCAGAGTAACATTAGCGGTTCTAGACTGAGCTAGAGTGAGAGTGAGATAG
AGTGACAAACACAAAAAAGC

Product: endonuclease III

Products: NA

Alternate protein names: DNA-(apurinic or apyrimidinic site) lyase [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNAEKRRLILERLRENNPHPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANTAQAIAALGVEGLKPYIKTIG
LYNNKAINVVKACEILVEKYNGEVPEDREALESLPGVGRKTANVVLNTAFGWPTIAVDTHIDRVCNRTKFAIGKNVVEVE
KKLLKVVPAEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKDKIYPEE

Sequences:

>Translated_213_residues
MNAEKRRLILERLRENNPHPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANTAQAIAALGVEGLKPYIKTIG
LYNNKAINVVKACEILVEKYNGEVPEDREALESLPGVGRKTANVVLNTAFGWPTIAVDTHIDRVCNRTKFAIGKNVVEVE
KKLLKVVPAEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKDKIYPEE
>Mature_213_residues
MNAEKRRLILERLRENNPHPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANTAQAIAALGVEGLKPYIKTIG
LYNNKAINVVKACEILVEKYNGEVPEDREALESLPGVGRKTANVVLNTAFGWPTIAVDTHIDRVCNRTKFAIGKNVVEVE
KKLLKVVPAEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKDKIYPEE

Specific function: Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA dam

COG id: COG0177

COG function: function code L; Predicted EndoIII-related endonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

Organism=Homo sapiens, GI4505471, Length=177, Percent_Identity=29.3785310734463, Blast_Score=88, Evalue=5e-18,
Organism=Escherichia coli, GI1787920, Length=209, Percent_Identity=81.8181818181818, Blast_Score=355, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17554540, Length=177, Percent_Identity=32.2033898305085, Blast_Score=97, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6324530, Length=192, Percent_Identity=27.0833333333333, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45550361, Length=178, Percent_Identity=32.0224719101124, Blast_Score=94, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR004036
- InterPro:   IPR005759
- InterPro:   IPR004035
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF10576 EndIII_4Fe-2S; PF00633 HHH; PF00730 HhH-GPD [H]

EC number: =4.2.99.18 [H]

Molecular weight: Translated: 23808; Mature: 23808

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS00764 ENDONUCLEASE_III_1 ; PS01155 ENDONUCLEASE_III_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAEKRRLILERLRENNPHPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANT
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHH
AQAIAALGVEGLKPYIKTIGLYNNKAINVVKACEILVEKYNGEVPEDREALESLPGVGRK
HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
TANVVLNTAFGWPTIAVDTHIDRVCNRTKFAIGKNVVEVEKKLLKVVPAEFKVDVHHWLI
HHHEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHEEEHHHEEE
LHGRYTCIARKPRCGSCIIEDLCEFKDKIYPEE
EECCEEEEECCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAEKRRLILERLRENNPHPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANT
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHH
AQAIAALGVEGLKPYIKTIGLYNNKAINVVKACEILVEKYNGEVPEDREALESLPGVGRK
HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC
TANVVLNTAFGWPTIAVDTHIDRVCNRTKFAIGKNVVEVEKKLLKVVPAEFKVDVHHWLI
HHHEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHEEEHHHEEE
LHGRYTCIARKPRCGSCIIEDLCEFKDKIYPEE
EECCEEEEECCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]