| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623779
Identifier: 167623779
GI number: 167623779
Start: 2208500
End: 2209681
Strand: Reverse
Name: 167623779
Synonym: Shal_1849
Alternate gene names: NA
Gene position: 2209681-2208500 (Counterclockwise)
Preceding gene: 167623784
Following gene: 167623774
Centisome position: 42.28
GC content: 45.69
Gene sequence:
>1182_bases ATGTGCACAAGAATTTTTAACAGCTTGAACCCTGAATTCCCCATGACCGGCAGAAACTTTGACTGGTTTAGCCCATTAAC CACCTACCTATATAGAATTCCCAATAGCAAAGAGGTGCGCTCAGGTAACTTAAAACAACAAGCACACCCAGTCGAATTAT CAAACCATGATGTTTTCACTTGGCAGGCAAAGTATGCCAGTATAGCTTCCCTAGTGGGAAATGATCAGCTTGGATTAGGC AGCATTGATGGCATTAATAGCCAAGGACTCGCTGTTAATGGTCTTGAAGATCTATTTGCTTACTTTGAAGATAATGACAA GGTCATTGATGATGGAAATATAAAGCCCATCGCTCTATTAAAAGCCATAGAGAAAGATCGCAACGCATTTCTTGATCAAC TTAAAATACCTGAAGGTGCGCAGCTACTTGGCTCTCTTCGTTGGGTCCAATTCACGTTAGATTGTTTTGATACTGTAAAG GCTGCAACCAGCTACTTCAGTCAAAATCCAGATCAGCTATACATCTATAGTGATGATGTTCCTGACGGGTTAGACACCAC CACAAAGGCTAAGCTGCACCTGACTCTCTCAGACAGAACAGGCGACTCAGCCATTATTGAACTGAGAGATGGCAAATTTA ACGTACACGAAAATCGTGACTACAATGTAGCAACGGTTAACCCGGGTTATGATGTTCAGCTCGCACTCTTAAAGCCATGG CAGAAGAAATGGCAACAAGAGGTTAATATACAAGACAGCCTCGCAGGTTTTACCCTCTTTGATCTGCCTGGCGGCCCGGT GTCGCAACAACGCTTTGCCCGCGCAGCTTATTACTATGAGTTTTCTGAGCCTGCCAGCAACCGCCAGAATGCCTTAGCTC AAACAAGAGCACTTATGGCCGCTACCGCAACGCCGCTCTGTTACAACTCAATGAAACACTCTACCGTTAAGGGGCAGTCC TCCAATACCCTATGGTGCAGTGTCAGCGAGCATGGCGCTTTGCGCTATCACCTAATAAACACCTATAGCATGGCACCTGT ATGGGTGAGCTTTGATAACCCAAGCAACAGCTGTGAGCGTCTCCTCATCCTCAAAAGAGACCCAAATGGAGAAGCGATAT CCAGCGAACTCATGGGAGATGTACAACAACAGCTACACCCCTGCGACAACCCTTTCATGTAG
Upstream 100 bases:
>100_bases AATTAAATAAACTCAACTACAACCCACTTAATTAACGCATGATTTAACACACGATAATTATTAAGCAAAAACTAATAAAA AACTCTCAAAAGGATATGGA
Downstream 100 bases:
>100_bases TCTTTCGTGTAGTCTCTTGTGTTGTCTATTGTGTAGTTAAGCTAAACCGAGTGAACTAATTGAATGACAAGCTGCAAGAA ACCCCAATAGCGGGATCATC
Product: choloylglycine hydrolase
Products: NA
Alternate protein names: Choloylglycine Hydrolase Family Protein; Preprotein Translocase SecA Subunit; Hydrolase Penicillin Acylase; Choloylglycine Hydrolase Protein; Hydrolase; Penicillin Acylase; Penicillin Amidase; Conjugated Bile Salt Hydrolase; Exported Carbon-Nitrogen Hydrolase; Exported Hydrolase; Twin-Arginine Translocation Pathway Signal; Hydrolase/Amidase; Penicillin Acylase . Cysteine Peptidase. MEROPS Family C
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MCTRIFNSLNPEFPMTGRNFDWFSPLTTYLYRIPNSKEVRSGNLKQQAHPVELSNHDVFTWQAKYASIASLVGNDQLGLG SIDGINSQGLAVNGLEDLFAYFEDNDKVIDDGNIKPIALLKAIEKDRNAFLDQLKIPEGAQLLGSLRWVQFTLDCFDTVK AATSYFSQNPDQLYIYSDDVPDGLDTTTKAKLHLTLSDRTGDSAIIELRDGKFNVHENRDYNVATVNPGYDVQLALLKPW QKKWQQEVNIQDSLAGFTLFDLPGGPVSQQRFARAAYYYEFSEPASNRQNALAQTRALMAATATPLCYNSMKHSTVKGQS SNTLWCSVSEHGALRYHLINTYSMAPVWVSFDNPSNSCERLLILKRDPNGEAISSELMGDVQQQLHPCDNPFM
Sequences:
>Translated_393_residues MCTRIFNSLNPEFPMTGRNFDWFSPLTTYLYRIPNSKEVRSGNLKQQAHPVELSNHDVFTWQAKYASIASLVGNDQLGLG SIDGINSQGLAVNGLEDLFAYFEDNDKVIDDGNIKPIALLKAIEKDRNAFLDQLKIPEGAQLLGSLRWVQFTLDCFDTVK AATSYFSQNPDQLYIYSDDVPDGLDTTTKAKLHLTLSDRTGDSAIIELRDGKFNVHENRDYNVATVNPGYDVQLALLKPW QKKWQQEVNIQDSLAGFTLFDLPGGPVSQQRFARAAYYYEFSEPASNRQNALAQTRALMAATATPLCYNSMKHSTVKGQS SNTLWCSVSEHGALRYHLINTYSMAPVWVSFDNPSNSCERLLILKRDPNGEAISSELMGDVQQQLHPCDNPFM >Mature_393_residues MCTRIFNSLNPEFPMTGRNFDWFSPLTTYLYRIPNSKEVRSGNLKQQAHPVELSNHDVFTWQAKYASIASLVGNDQLGLG SIDGINSQGLAVNGLEDLFAYFEDNDKVIDDGNIKPIALLKAIEKDRNAFLDQLKIPEGAQLLGSLRWVQFTLDCFDTVK AATSYFSQNPDQLYIYSDDVPDGLDTTTKAKLHLTLSDRTGDSAIIELRDGKFNVHENRDYNVATVNPGYDVQLALLKPW QKKWQQEVNIQDSLAGFTLFDLPGGPVSQQRFARAAYYYEFSEPASNRQNALAQTRALMAATATPLCYNSMKHSTVKGQS SNTLWCSVSEHGALRYHLINTYSMAPVWVSFDNPSNSCERLLILKRDPNGEAISSELMGDVQQQLHPCDNPFM
Specific function: Unknown
COG id: COG3049
COG function: function code M; Penicillin V acylase and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44102; Mature: 44102
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCTRIFNSLNPEFPMTGRNFDWFSPLTTYLYRIPNSKEVRSGNLKQQAHPVELSNHDVFT CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCEEECCCEEEE WQAKYASIASLVGNDQLGLGSIDGINSQGLAVNGLEDLFAYFEDNDKVIDDGNIKPIALL EEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCEEEECCCCCHHHHH KAIEKDRNAFLDQLKIPEGAQLLGSLRWVQFTLDCFDTVKAATSYFSQNPDQLYIYSDDV HHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCC PDGLDTTTKAKLHLTLSDRTGDSAIIELRDGKFNVHENRDYNVATVNPGYDVQLALLKPW CCCCCCCCEEEEEEEEECCCCCEEEEEEECCEEEECCCCCEEEEEECCCCCEEEEEECHH QKKWQQEVNIQDSLAGFTLFDLPGGPVSQQRFARAAYYYEFSEPASNRQNALAQTRALMA HHHHHHHCCCHHHHCCEEEEECCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHH ATATPLCYNSMKHSTVKGQSSNTLWCSVSEHGALRYHLINTYSMAPVWVSFDNPSNSCER HHCCCHHHHCCCCCEECCCCCCEEEEEECCCCCEEEEEEEEEEECEEEEEECCCCCCCEE LLILKRDPNGEAISSELMGDVQQQLHPCDNPFM EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MCTRIFNSLNPEFPMTGRNFDWFSPLTTYLYRIPNSKEVRSGNLKQQAHPVELSNHDVFT CCHHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCEEECCCEEEE WQAKYASIASLVGNDQLGLGSIDGINSQGLAVNGLEDLFAYFEDNDKVIDDGNIKPIALL EEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCEEEECCCCCHHHHH KAIEKDRNAFLDQLKIPEGAQLLGSLRWVQFTLDCFDTVKAATSYFSQNPDQLYIYSDDV HHHHHHHHHHHHHHCCCCHHHHHHHHEEEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCC PDGLDTTTKAKLHLTLSDRTGDSAIIELRDGKFNVHENRDYNVATVNPGYDVQLALLKPW CCCCCCCCEEEEEEEEECCCCCEEEEEEECCEEEECCCCCEEEEEECCCCCEEEEEECHH QKKWQQEVNIQDSLAGFTLFDLPGGPVSQQRFARAAYYYEFSEPASNRQNALAQTRALMA HHHHHHHCCCHHHHCCEEEEECCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHH ATATPLCYNSMKHSTVKGQSSNTLWCSVSEHGALRYHLINTYSMAPVWVSFDNPSNSCER HHCCCHHHHCCCCCEECCCCCCEEEEEECCCCCEEEEEEEEEEECEEEEEECCCCCCCEE LLILKRDPNGEAISSELMGDVQQQLHPCDNPFM EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA