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The map label for this gene is ytfM [H]

Identifier: 167623774

GI number: 167623774

Start: 2203390

End: 2205237

Strand: Reverse

Name: ytfM [H]

Synonym: Shal_1844

Alternate gene names: 167623774

Gene position: 2205237-2203390 (Counterclockwise)

Preceding gene: 167623779

Following gene: 167623773

Centisome position: 42.19

GC content: 43.67

Gene sequence:

>1848_bases
TTGTTAAAAAGTTTGCTTCGAGTACTAACCATCCCCTTACTGCTTATCGGTGTTACATGCGTAACATTTTCAGTTCAGGC
GAATGATTGGATAACACTCAAGATTAAAGGTGTCGAGGGTAGCTTGGCACGTAACGTAAAGGCTCACTTGGGTACATTGC
CTGACTCGAGTGTGCAACGCCGTGCATTTATCTTTAATGCCGAAGATAATACAGAGGCAGCGATGCACTCTATGGGCTAT
TACCACAGCAAAATTTCCCAGCATGTCACCAACAATGAAAAAAAAGCTTGGGTGCTCAATATTGATATCGATGCAGGACC
ACCGACATTAATTAGTTGGATTGATATTCAAGTTAAAGGTGAGATGCGAAATGATCCCATTTTTGAAAAATGGCTCAGCC
AATTAAAAATCCGTCCAGGAGATAGACTCAATCAAGGAGTTTACGAGGATATCAAGTCACAACTACTGACTCTCGCACTC
GCTAGAGGGTATTTTGATGGCAAATTTGACCAAGCCCAAATCGCCGTTAACCGCGATTTTAACACCGCTAAAATTTCACT
CTATTATGACTCGGGTAAGCGATACCACATAGGTAAGGTCAGTTTTACCGGCTCTACCTTAGAGCCGCAGATTCTAGAGG
AATTGATCCCATTTAAACTTGATGCACCATACAGCACCGCAAACCTAGGTCAGTTAAACAGACAGTTGTTAGATACCGGT
TATTTTTCCAATATCAAGGTGCTACCTCTGGTTGATCAAGTCAAAGGCCTGCAAGTTCCGGTGCGTGTAGAGCTAAGTTC
ACGGCCTTATCACTCTATCGAGTTAGGTCTAGGTGCTGATATTGGTAATACTGTCGATAACAACCTTGAACCAAGAGTAC
GAGTGACCTGGCGTACCCCGCAAATTAATAAATATGGCCATTCGCAGGAAACAACTGCCGAGTGGTCACCGGATAAACCT
AAGTTTTTAACCACTTATACTATCCCGCTCAGCCATCCAATTGACGACCAATTAAAAATCCGCGTGGGTATACTACGGGA
TAAGTACGGTGTCACTCAGGTCTACAATCCTGACGAACGTCAATTTAATAATACGGGTCAACTTGAAGCTACCAAAACGG
TATTAGCGGTGATCAGACATCAGCGCCTTGAAAGTAAATGGCTATTTAACTATTCAGCTGAAGTCATGAGCGAAAACTAT
ACCCAATCCGGTGTGGACTATGACCCCAGATATGTTTTGTTCGGCACTAGCCTCTCGAAAACGGTTCGTGGCGATAATTC
TCTCGATCCTAAATCTGGCTTCTTCCAATTCTATAGTCTCGAATATGCCGATCCTAACTTGGGTTCAGAGGTCAGGCTGG
CACGGTTACAGAGCAAGTTCATCTGGATTGACACATTTTTTGAAAAACACAGGATCGTTTCCCGCTTAGATATGGCAGCA
AACTTAACCAGTAACAATTCATTGGCAGAGATCCCGCCCTCATTGCGCTATTTTGCCGGTGGTGACCAAAGTATTCGTGG
TTATAGTTACAATGAACTCGGTCCTTCAATTGACAGTGTTAATGCTGACGGTGAAGTGATCAGAGAGGTCGTCGGTGGAC
GTTATCTTATGGTGGGTAGTATAGAGTATCAATACTATTTAACCCCACACTGGCGTGTAGCGACATTTGTCGATGCGGGT
AATGCATTTGATGTTAACCAAATTGAGTTTGTGACTTCAGTGGGCGCAGGTATTCATTGGATCTCGCCAATCGGCCCAGT
AAAGCTCGATATAGGTATTGGTTTAAAAGAGACCGATACCATTAGTCGTCCTTGGCGAATTCACATCACAATGGGGTCTG
TGTTATGA

Upstream 100 bases:

>100_bases
TAACCATTTTCGACCATAATTACAATCAGCAACTTGCTTGAGCTAACGATTCTAGTGACAATAGCTTGTCTAAATTAAAC
TAATACTAAGAGTCTAATTT

Downstream 100 bases:

>100_bases
CGACTCCTTCTCATCAAGGTCCAAAAGCTAGTTTCCCCGCTAACCCACCAGCGATGAAGCGCTCTTGGCGTGCAAATATG
TGGCGCTGGTTTAAACGAAT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLKSLLRVLTIPLLLIGVTCVTFSVQANDWITLKIKGVEGSLARNVKAHLGTLPDSSVQRRAFIFNAEDNTEAAMHSMGY
YHSKISQHVTNNEKKAWVLNIDIDAGPPTLISWIDIQVKGEMRNDPIFEKWLSQLKIRPGDRLNQGVYEDIKSQLLTLAL
ARGYFDGKFDQAQIAVNRDFNTAKISLYYDSGKRYHIGKVSFTGSTLEPQILEELIPFKLDAPYSTANLGQLNRQLLDTG
YFSNIKVLPLVDQVKGLQVPVRVELSSRPYHSIELGLGADIGNTVDNNLEPRVRVTWRTPQINKYGHSQETTAEWSPDKP
KFLTTYTIPLSHPIDDQLKIRVGILRDKYGVTQVYNPDERQFNNTGQLEATKTVLAVIRHQRLESKWLFNYSAEVMSENY
TQSGVDYDPRYVLFGTSLSKTVRGDNSLDPKSGFFQFYSLEYADPNLGSEVRLARLQSKFIWIDTFFEKHRIVSRLDMAA
NLTSNNSLAEIPPSLRYFAGGDQSIRGYSYNELGPSIDSVNADGEVIREVVGGRYLMVGSIEYQYYLTPHWRVATFVDAG
NAFDVNQIEFVTSVGAGIHWISPIGPVKLDIGIGLKETDTISRPWRIHITMGSVL

Sequences:

>Translated_615_residues
MLKSLLRVLTIPLLLIGVTCVTFSVQANDWITLKIKGVEGSLARNVKAHLGTLPDSSVQRRAFIFNAEDNTEAAMHSMGY
YHSKISQHVTNNEKKAWVLNIDIDAGPPTLISWIDIQVKGEMRNDPIFEKWLSQLKIRPGDRLNQGVYEDIKSQLLTLAL
ARGYFDGKFDQAQIAVNRDFNTAKISLYYDSGKRYHIGKVSFTGSTLEPQILEELIPFKLDAPYSTANLGQLNRQLLDTG
YFSNIKVLPLVDQVKGLQVPVRVELSSRPYHSIELGLGADIGNTVDNNLEPRVRVTWRTPQINKYGHSQETTAEWSPDKP
KFLTTYTIPLSHPIDDQLKIRVGILRDKYGVTQVYNPDERQFNNTGQLEATKTVLAVIRHQRLESKWLFNYSAEVMSENY
TQSGVDYDPRYVLFGTSLSKTVRGDNSLDPKSGFFQFYSLEYADPNLGSEVRLARLQSKFIWIDTFFEKHRIVSRLDMAA
NLTSNNSLAEIPPSLRYFAGGDQSIRGYSYNELGPSIDSVNADGEVIREVVGGRYLMVGSIEYQYYLTPHWRVATFVDAG
NAFDVNQIEFVTSVGAGIHWISPIGPVKLDIGIGLKETDTISRPWRIHITMGSVL
>Mature_615_residues
MLKSLLRVLTIPLLLIGVTCVTFSVQANDWITLKIKGVEGSLARNVKAHLGTLPDSSVQRRAFIFNAEDNTEAAMHSMGY
YHSKISQHVTNNEKKAWVLNIDIDAGPPTLISWIDIQVKGEMRNDPIFEKWLSQLKIRPGDRLNQGVYEDIKSQLLTLAL
ARGYFDGKFDQAQIAVNRDFNTAKISLYYDSGKRYHIGKVSFTGSTLEPQILEELIPFKLDAPYSTANLGQLNRQLLDTG
YFSNIKVLPLVDQVKGLQVPVRVELSSRPYHSIELGLGADIGNTVDNNLEPRVRVTWRTPQINKYGHSQETTAEWSPDKP
KFLTTYTIPLSHPIDDQLKIRVGILRDKYGVTQVYNPDERQFNNTGQLEATKTVLAVIRHQRLESKWLFNYSAEVMSENY
TQSGVDYDPRYVLFGTSLSKTVRGDNSLDPKSGFFQFYSLEYADPNLGSEVRLARLQSKFIWIDTFFEKHRIVSRLDMAA
NLTSNNSLAEIPPSLRYFAGGDQSIRGYSYNELGPSIDSVNADGEVIREVVGGRYLMVGSIEYQYYLTPHWRVATFVDAG
NAFDVNQIEFVTSVGAGIHWISPIGPVKLDIGIGLKETDTISRPWRIHITMGSVL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=596, Percent_Identity=32.5503355704698, Blast_Score=300, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 69358; Mature: 69358

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSLLRVLTIPLLLIGVTCVTFSVQANDWITLKIKGVEGSLARNVKAHLGTLPDSSVQR
CHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
RAFIFNAEDNTEAAMHSMGYYHSKISQHVTNNEKKAWVLNIDIDAGPPTLISWIDIQVKG
EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEC
EMRNDPIFEKWLSQLKIRPGDRLNQGVYEDIKSQLLTLALARGYFDGKFDQAQIAVNRDF
CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
NTAKISLYYDSGKRYHIGKVSFTGSTLEPQILEELIPFKLDAPYSTANLGQLNRQLLDTG
CEEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHCCEEECCCCCCCCHHHHHHHHHHCC
YFSNIKVLPLVDQVKGLQVPVRVELSSRPYHSIELGLGADIGNTVDNNLEPRVRVTWRTP
CCCCEEEEEEHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECC
QINKYGHSQETTAEWSPDKPKFLTTYTIPLSHPIDDQLKIRVGILRDKYGVTQVYNPDER
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCHH
QFNNTGQLEATKTVLAVIRHQRLESKWLFNYSAEVMSENYTQSGVDYDPRYVLFGTSLSK
HCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCEEEEECCHHH
TVRGDNSLDPKSGFFQFYSLEYADPNLGSEVRLARLQSKFIWIDTFFEKHRIVSRLDMAA
HHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHEECCCCEEEEEHHHHHHHHHHHHHHHH
NLTSNNSLAEIPPSLRYFAGGDQSIRGYSYNELGPSIDSVNADGEVIREVVGGRYLMVGS
CCCCCCCHHHCCCCCEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCEEEEEE
IEYQYYLTPHWRVATFVDAGNAFDVNQIEFVTSVGAGIHWISPIGPVKLDIGIGLKETDT
EEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCC
ISRPWRIHITMGSVL
CCCCEEEEEEECCCC
>Mature Secondary Structure
MLKSLLRVLTIPLLLIGVTCVTFSVQANDWITLKIKGVEGSLARNVKAHLGTLPDSSVQR
CHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCC
RAFIFNAEDNTEAAMHSMGYYHSKISQHVTNNEKKAWVLNIDIDAGPPTLISWIDIQVKG
EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEEEC
EMRNDPIFEKWLSQLKIRPGDRLNQGVYEDIKSQLLTLALARGYFDGKFDQAQIAVNRDF
CCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
NTAKISLYYDSGKRYHIGKVSFTGSTLEPQILEELIPFKLDAPYSTANLGQLNRQLLDTG
CEEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHCCEEECCCCCCCCHHHHHHHHHHCC
YFSNIKVLPLVDQVKGLQVPVRVELSSRPYHSIELGLGADIGNTVDNNLEPRVRVTWRTP
CCCCEEEEEEHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECC
QINKYGHSQETTAEWSPDKPKFLTTYTIPLSHPIDDQLKIRVGILRDKYGVTQVYNPDER
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCHH
QFNNTGQLEATKTVLAVIRHQRLESKWLFNYSAEVMSENYTQSGVDYDPRYVLFGTSLSK
HCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCEEEEECCHHH
TVRGDNSLDPKSGFFQFYSLEYADPNLGSEVRLARLQSKFIWIDTFFEKHRIVSRLDMAA
HHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHEECCCCEEEEEHHHHHHHHHHHHHHHH
NLTSNNSLAEIPPSLRYFAGGDQSIRGYSYNELGPSIDSVNADGEVIREVVGGRYLMVGS
CCCCCCCHHHCCCCCEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCEEEEEE
IEYQYYLTPHWRVATFVDAGNAFDVNQIEFVTSVGAGIHWISPIGPVKLDIGIGLKETDT
EEEEEEECCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCC
ISRPWRIHITMGSVL
CCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]