| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is hisB [H]
Identifier: 167623751
GI number: 167623751
Start: 2177000
End: 2178079
Strand: Reverse
Name: hisB [H]
Synonym: Shal_1821
Alternate gene names: 167623751
Gene position: 2178079-2177000 (Counterclockwise)
Preceding gene: 167623752
Following gene: 167623750
Centisome position: 41.67
GC content: 46.94
Gene sequence:
>1080_bases ATGAAGCAGAAAATTTTATTTATTGACCGTGATGGCACCCTCATCGAAGAACCAGTGACAGATAAGCAAGTCGATAGCTT AGCCAAGCTTGTTTTTGAGCCTAATGTGATCCCTGCTCTACTGAAACTACAAAACGCCGGTTATCGATTAGTCATGGTGA GTAATCAAGACGGTCTTGGCACGCCGTCGTTCCCAAGAGATGATTTCGACGCACCGCAAAATATGATGATGCAGATCTTA AACAGCCAAGGCGTGCTGTTTGATGATGTCCTTATCTGCCCTCACTTTAATGATGAGAACTGCAGTTGCCGTAAGCCTAA GCTTGGGCTAGTTAAAGATTACCTGACTTCTGGCAAGATTGATTTTACTCAGTCTGCTGTCATAGGAGACCGTGAAACCG ACTTAGGTCTTGCCGACTCGATGGGGATATTAGGTTTGCAATATCACCCTCAAAACCTTAACTGGAATGCCATTGCCGAC AAGCTTCTGAATAAGAACCGCAGTGCGACCGTTACTCGTACCACTAAAGAAACCGATATTCGCGTCACCGTCGATTTAGA TTCAAATGACAAAGGCGAGATCAACACTGGTATCGGCTTTTTCGACCATATGCTTGAGCAGATCTCAACTCACGGCAACT TTAAAATGGATGTAAAGGTTGATGGCGACTTGGAGATCGATGACCACCACAGCGTAGAAGATACCGCACTGGCTATCGGT GATGCGCTGCGCCAAGCCCTCGGTGACAAACGCGGTATCGCCCGTTTTGGCAATGCGTTTGAGCAGGCTATTCCTATGGA TGAGGCTAGTGCAACCTGTCTTTTGGACTTATCTGGTCGCCCGTTTATCAAGTTCGCTGGTGAGTTTGAGCGTGAACTCG TTGGCCAAATGGCAACCGAGATGGTACCGCACTTCTTCCGCTCGTTTGCCGATGGTCTGCGCTGTACATTACACATCAGC ACTCAAGGCGATAACGACCACCACAAAGTTGAAAGTTTATATAAGGTGTTAGGTCGGACTCTAAGGCAAGCTGTTGCAGT TGAAGGAGATAGCCTTCCCTCAAGTAAAGGTGTGTTATGA
Upstream 100 bases:
>100_bases TTAAAAGAATAACAATAGCTTGGCTGAGTATTAAATGAGTTTCGACTTGTTTAACCTTGTTTTAACTCAGTTAAGCCAGA ATCTGAAAGGTATAACCGCT
Downstream 100 bases:
>100_bases GCCAAACAGATATAGCAGCCATAGTCGGTAATACCGTCATTATCGATACTGGCTGCGCCAATTTAAGTTCTGTCCGCTAC GCCTTTGAACGCTTGATGAC
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MKQKILFIDRDGTLIEEPVTDKQVDSLAKLVFEPNVIPALLKLQNAGYRLVMVSNQDGLGTPSFPRDDFDAPQNMMMQIL NSQGVLFDDVLICPHFNDENCSCRKPKLGLVKDYLTSGKIDFTQSAVIGDRETDLGLADSMGILGLQYHPQNLNWNAIAD KLLNKNRSATVTRTTKETDIRVTVDLDSNDKGEINTGIGFFDHMLEQISTHGNFKMDVKVDGDLEIDDHHSVEDTALAIG DALRQALGDKRGIARFGNAFEQAIPMDEASATCLLDLSGRPFIKFAGEFERELVGQMATEMVPHFFRSFADGLRCTLHIS TQGDNDHHKVESLYKVLGRTLRQAVAVEGDSLPSSKGVL
Sequences:
>Translated_359_residues MKQKILFIDRDGTLIEEPVTDKQVDSLAKLVFEPNVIPALLKLQNAGYRLVMVSNQDGLGTPSFPRDDFDAPQNMMMQIL NSQGVLFDDVLICPHFNDENCSCRKPKLGLVKDYLTSGKIDFTQSAVIGDRETDLGLADSMGILGLQYHPQNLNWNAIAD KLLNKNRSATVTRTTKETDIRVTVDLDSNDKGEINTGIGFFDHMLEQISTHGNFKMDVKVDGDLEIDDHHSVEDTALAIG DALRQALGDKRGIARFGNAFEQAIPMDEASATCLLDLSGRPFIKFAGEFERELVGQMATEMVPHFFRSFADGLRCTLHIS TQGDNDHHKVESLYKVLGRTLRQAVAVEGDSLPSSKGVL >Mature_359_residues MKQKILFIDRDGTLIEEPVTDKQVDSLAKLVFEPNVIPALLKLQNAGYRLVMVSNQDGLGTPSFPRDDFDAPQNMMMQIL NSQGVLFDDVLICPHFNDENCSCRKPKLGLVKDYLTSGKIDFTQSAVIGDRETDLGLADSMGILGLQYHPQNLNWNAIAD KLLNKNRSATVTRTTKETDIRVTVDLDSNDKGEINTGIGFFDHMLEQISTHGNFKMDVKVDGDLEIDDHHSVEDTALAIG DALRQALGDKRGIARFGNAFEQAIPMDEASATCLLDLSGRPFIKFAGEFERELVGQMATEMVPHFFRSFADGLRCTLHIS TQGDNDHHKVESLYKVLGRTLRQAVAVEGDSLPSSKGVL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=359, Percent_Identity=60.7242339832869, Blast_Score=455, Evalue=1e-129, Organism=Escherichia coli, GI1786399, Length=143, Percent_Identity=31.4685314685315, Blast_Score=65, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6324776, Length=219, Percent_Identity=37.8995433789954, Blast_Score=158, Evalue=1e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 39728; Mature: 39728
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2 ; PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQKILFIDRDGTLIEEPVTDKQVDSLAKLVFEPNVIPALLKLQNAGYRLVMVSNQDGLG CCCEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCC TPSFPRDDFDAPQNMMMQILNSQGVLFDDVLICPHFNDENCSCRKPKLGLVKDYLTSGKI CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCC DFTQSAVIGDRETDLGLADSMGILGLQYHPQNLNWNAIADKLLNKNRSATVTRTTKETDI CCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCEE RVTVDLDSNDKGEINTGIGFFDHMLEQISTHGNFKMDVKVDGDLEIDDHHSVEDTALAIG EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHH DALRQALGDKRGIARFGNAFEQAIPMDEASATCLLDLSGRPFIKFAGEFERELVGQMATE HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHH MVPHFFRSFADGLRCTLHISTQGDNDHHKVESLYKVLGRTLRQAVAVEGDSLPSSKGVL HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKQKILFIDRDGTLIEEPVTDKQVDSLAKLVFEPNVIPALLKLQNAGYRLVMVSNQDGLG CCCEEEEEECCCCEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCC TPSFPRDDFDAPQNMMMQILNSQGVLFDDVLICPHFNDENCSCRKPKLGLVKDYLTSGKI CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCC DFTQSAVIGDRETDLGLADSMGILGLQYHPQNLNWNAIADKLLNKNRSATVTRTTKETDI CCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCEE RVTVDLDSNDKGEINTGIGFFDHMLEQISTHGNFKMDVKVDGDLEIDDHHSVEDTALAIG EEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHH DALRQALGDKRGIARFGNAFEQAIPMDEASATCLLDLSGRPFIKFAGEFERELVGQMATE HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEECCHHHHHHHHHHHHH MVPHFFRSFADGLRCTLHISTQGDNDHHKVESLYKVLGRTLRQAVAVEGDSLPSSKGVL HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]