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The map label for this gene is dcrA [H]

Identifier: 167623741

GI number: 167623741

Start: 2166004

End: 2167500

Strand: Reverse

Name: dcrA [H]

Synonym: Shal_1811

Alternate gene names: 167623741

Gene position: 2167500-2166004 (Counterclockwise)

Preceding gene: 167623746

Following gene: 167623740

Centisome position: 41.47

GC content: 46.03

Gene sequence:

>1497_bases
ATGAAAGAAGTGAAGTTCCGCTGGGTCGATAAATACCTTATCCACATGACCCTTAAAACAAAGTTTGCATTATTAGCGAT
AATTCCCATCATTACCCTTCTCGGCCTGTCGGCTCTGCTCAACAGCGAGTACAAGCAAAACTTAGTCGAAAACCAAGTCG
CACAAACTCATAGTTTCAACCAAACACTGAGTCATACCCTCGATACGGCCTATCAATATATTCCGGCAGAAAATAGAGAC
GCATTTCTTGGCGCGTTAAACGGTCAAGTCACCGTCTATAAGCAACAAAGTGCAAGCCAGCAAATCTCGGCCTTAGCAGC
AAAAGGCGGTGAGACTAACATTCAAGGCAATAGAATCCAAAGTGTTAGCCCACTAAGCTCCCAAGGGCTAATCACCGTGT
TAACGACAGGGCAAAATAGTGAAAGCCATAACGAGTATCTTGCCTATATTGCGATAGCCATATTGATCTGCATTATCCTT
ATCTTCAGTTACTATATTTCAAGTTTTGTTGGCGGGGCGCTTTACACCAACGTCATGGCGCTGAAAAGAGCGGCGGAGGG
AGATCTCACTGGGCGGCTTAATTTTTTTGAAGTTAAAGATGAGTTCAGCATTCTAGCGATTAGCATCGACACCCTAGTCG
AGCGTCAGCATAAACTGGTTAGTGAGATGACAAATGCTAGCTTACAGATCCGTAATGTGGTTCAGGCGTTTAGAAACACG
GCACAGGATGGACAATCGTTAGCGATGAATCAGCGCCAACATATCGACTCATTGGCAACCGCCATGGAGCAGATGACCGC
GGCTGTATCAGAGGTCGCCCGCAACGCAGAACTTTCATCAACCGAGACTCAAGAAGCAAATGTGCAAGTTGATGCGGGTT
CTCGTGATATTGCCATCACTGTAGATGCCATTGGCAGCCTATCAAATGAAATTGCAGATGCCTCTGTTGCCGTAAATGAT
CTCAATGAGAACGCAGCTAAAATTGATGAGGTAGTCACCACCATTAATGCCATTTCAGAGCAAACGAACTTACTCGCATT
AAATGCTGCCATTGAAGCAGCCCGAGCTGGCGAACAAGGCCGTGGCTTCGCCGTGGTTGCAGATGAAGTCAGAACCCTAG
CGGGTCGCACACAAGCCGCTACAGTTGAAATTAAATCCATGATTGAAGCACTTCAATCGGGGGCCCGTGACTTAAAACAG
GTAATGAGTCGAACCGTCGAAAAAGCAGAAGACGGCAAAAAGCACGTACTCGACACGGGTAAAGATCTGCAAGGTATCGC
TCATCACAGCGCGAAAGTTTATGAGATGAGTATATTGATCGCAACTTCGGCAGAAGAGCAATCTGCCGTTGCCAATGAAA
TTGCAACCAATCTAATGGACATTCGCAATCAATCACATGATGTTGAGAAGTCGGCGAATCAATCTGTTTCTGGCTGCGAT
GAACTCCATGCTACAGCCGAACAGTTGGATAAACTTCTCGTTGGGCTAAGAGTATAA

Upstream 100 bases:

>100_bases
AAGTCATCAAATACGCTGCGTATCGTAAAAAAAGAGTTAAGGAACGCCTCGACCTTCCGATAAATAGCTAAGTCGCCGCC
AAATATAAAAAGAGAATACG

Downstream 100 bases:

>100_bases
CCGCACTCTCTACTTCACAAAATCCACTTCATACAAAAGCAGCCACACGCTGCTTTTTTTGTTTCCTTCTGAAATATTTA
TGCATAGATACATCAGTTTG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MKEVKFRWVDKYLIHMTLKTKFALLAIIPIITLLGLSALLNSEYKQNLVENQVAQTHSFNQTLSHTLDTAYQYIPAENRD
AFLGALNGQVTVYKQQSASQQISALAAKGGETNIQGNRIQSVSPLSSQGLITVLTTGQNSESHNEYLAYIAIAILICIIL
IFSYYISSFVGGALYTNVMALKRAAEGDLTGRLNFFEVKDEFSILAISIDTLVERQHKLVSEMTNASLQIRNVVQAFRNT
AQDGQSLAMNQRQHIDSLATAMEQMTAAVSEVARNAELSSTETQEANVQVDAGSRDIAITVDAIGSLSNEIADASVAVND
LNENAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGARDLKQ
VMSRTVEKAEDGKKHVLDTGKDLQGIAHHSAKVYEMSILIATSAEEQSAVANEIATNLMDIRNQSHDVEKSANQSVSGCD
ELHATAEQLDKLLVGLRV

Sequences:

>Translated_498_residues
MKEVKFRWVDKYLIHMTLKTKFALLAIIPIITLLGLSALLNSEYKQNLVENQVAQTHSFNQTLSHTLDTAYQYIPAENRD
AFLGALNGQVTVYKQQSASQQISALAAKGGETNIQGNRIQSVSPLSSQGLITVLTTGQNSESHNEYLAYIAIAILICIIL
IFSYYISSFVGGALYTNVMALKRAAEGDLTGRLNFFEVKDEFSILAISIDTLVERQHKLVSEMTNASLQIRNVVQAFRNT
AQDGQSLAMNQRQHIDSLATAMEQMTAAVSEVARNAELSSTETQEANVQVDAGSRDIAITVDAIGSLSNEIADASVAVND
LNENAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGARDLKQ
VMSRTVEKAEDGKKHVLDTGKDLQGIAHHSAKVYEMSILIATSAEEQSAVANEIATNLMDIRNQSHDVEKSANQSVSGCD
ELHATAEQLDKLLVGLRV
>Mature_498_residues
MKEVKFRWVDKYLIHMTLKTKFALLAIIPIITLLGLSALLNSEYKQNLVENQVAQTHSFNQTLSHTLDTAYQYIPAENRD
AFLGALNGQVTVYKQQSASQQISALAAKGGETNIQGNRIQSVSPLSSQGLITVLTTGQNSESHNEYLAYIAIAILICIIL
IFSYYISSFVGGALYTNVMALKRAAEGDLTGRLNFFEVKDEFSILAISIDTLVERQHKLVSEMTNASLQIRNVVQAFRNT
AQDGQSLAMNQRQHIDSLATAMEQMTAAVSEVARNAELSSTETQEANVQVDAGSRDIAITVDAIGSLSNEIADASVAVND
LNENAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGARDLKQ
VMSRTVEKAEDGKKHVLDTGKDLQGIAHHSAKVYEMSILIATSAEEQSAVANEIATNLMDIRNQSHDVEKSANQSVSGCD
ELHATAEQLDKLLVGLRV

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=194, Percent_Identity=38.659793814433, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788195, Length=201, Percent_Identity=36.81592039801, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI2367378, Length=314, Percent_Identity=28.6624203821656, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788194, Length=308, Percent_Identity=29.8701298701299, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1789453, Length=131, Percent_Identity=37.4045801526718, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 53954; Mature: 53954

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEVKFRWVDKYLIHMTLKTKFALLAIIPIITLLGLSALLNSEYKQNLVENQVAQTHSFN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLSHTLDTAYQYIPAENRDAFLGALNGQVTVYKQQSASQQISALAAKGGETNIQGNRIQ
HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC
SVSPLSSQGLITVLTTGQNSESHNEYLAYIAIAILICIILIFSYYISSFVGGALYTNVMA
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRAAEGDLTGRLNFFEVKDEFSILAISIDTLVERQHKLVSEMTNASLQIRNVVQAFRNT
HHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AQDGQSLAMNQRQHIDSLATAMEQMTAAVSEVARNAELSSTETQEANVQVDAGSRDIAIT
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE
VDAIGSLSNEIADASVAVNDLNENAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCC
RGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGARDLKQVMSRTVEKAEDGKKHVLDTG
CCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
KDLQGIAHHSAKVYEMSILIATSAEEQSAVANEIATNLMDIRNQSHDVEKSANQSVSGCD
CHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
ELHATAEQLDKLLVGLRV
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEVKFRWVDKYLIHMTLKTKFALLAIIPIITLLGLSALLNSEYKQNLVENQVAQTHSFN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLSHTLDTAYQYIPAENRDAFLGALNGQVTVYKQQSASQQISALAAKGGETNIQGNRIQ
HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC
SVSPLSSQGLITVLTTGQNSESHNEYLAYIAIAILICIILIFSYYISSFVGGALYTNVMA
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRAAEGDLTGRLNFFEVKDEFSILAISIDTLVERQHKLVSEMTNASLQIRNVVQAFRNT
HHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AQDGQSLAMNQRQHIDSLATAMEQMTAAVSEVARNAELSSTETQEANVQVDAGSRDIAIT
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEE
VDAIGSLSNEIADASVAVNDLNENAAKIDEVVTTINAISEQTNLLALNAAIEAARAGEQG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCC
RGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGARDLKQVMSRTVEKAEDGKKHVLDTG
CCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
KDLQGIAHHSAKVYEMSILIATSAEEQSAVANEIATNLMDIRNQSHDVEKSANQSVSGCD
CHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
ELHATAEQLDKLLVGLRV
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]