| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is arcB [C]
Identifier: 167623740
GI number: 167623740
Start: 2163138
End: 2165786
Strand: Reverse
Name: arcB [C]
Synonym: Shal_1810
Alternate gene names: 167623740
Gene position: 2165786-2163138 (Counterclockwise)
Preceding gene: 167623741
Following gene: 167623732
Centisome position: 41.44
GC content: 40.96
Gene sequence:
>2649_bases ATGACTAAATCAAGTATGAGGCGCACTAAACTGACCGATTGGCGTTCAAGCTTGCCAATGCAATTCATGTTGGTTCAGCT CGTTGTTGCAGCTGTGATTATCATTGCCAGCGTTTGGTTTCTAAAGTCAATTGAAACAGATCGCTTAATCGATAACCAGC AATCGCTTAGTATTAACCTGGGCAAAACCATAGCGGCAAAACTTCAACAAAAAACCAATAAAATAGAGAACCTTGCGGTG TCCCTTGGCACGCTAGGGGAACTATATCAACAACAACCCAAACAATTAAACTTAGCCGTACCGGCACTGTTAGATCAGCC TGGTCAACAGGAAGTGATTCTAGGTGGTGGAGTGTGGCCTGAGCCCTTTGCGTTTGACTCTAAAAAACAAAAAAACAGTT ATTTTTGGGCGCGTGATTTTGCAGGGGAGCTTATTCAGGTCAATGATTATAATGCAGCAACAATCCCGCCCTACTATCTA GAAAACTGGTATATTCCGGCCAAATATTACCCAACAGATACCACCTATTGGTCTAAATCATATATTGACCCTTTTACCCA AATACCGATGATCACAGCCTCTGTTCCTATGTGGTCAGAGCATCAATTCATAGGCGTTTCCACCGTCGATATCGCCTTAT CAAGCTTAGATAACTTCTTCACGACGGCGATATCCAGCCAAGGTGGCTATGTATTTGCACTAGATCAACAGAACCGTTTG CTGTCCTACCCCGACTATAATTTAGAGGATGCGGTACAAAACAATAGCCGTGAGCTATTTCAGCCCTTCTCCACTTTTTC TAAGAACCACCCCGGCTTTAAGCCGCTTCAGGAGACCATAGAAAAAATTGATGCTGACTTTATTCGAGTCGCTAGCAACA CAAAAGCATATGACGATAAACAACTAAAAAATGTTATAGCAAATGTGCCAGCCCATGAACGACCGAAACTTATCGCATTG ATCAATCAAAATGCGAATAACAAATTAAAACAGGTCGAACTGGTCGCCAGTGTGAAATTAGATAATGATCCAAGACTAAA AGAACCCGTTATCGTCACAGTCTTCCTTATGCCGGGCACCTATTGGAAAATAGTGCTAGTCACGCCATTATCGAGTATTA CTTACAATGAACAATCTTTAGCAAACTCTATCGGGATCTATTTAGTCAGCATACAAATTGTGGCATTGATGCTACTTTTT ATCATGCAAAACTCGCTGTTTATTGCTCCTATTAGCCGCATGGTAAAGGCATTGAATGATAATAACGCTGCGAAGATTGA GCTTGAAGCAACAACCCGTCATGATGAAATAGGCATGCTTGCTAAAGCCTTTAGCTCTCGAACTCGACAATTAGAGATAG CTTTGGCTAGTTTAGACGCCACCAACCTCGCCTTAGAGCTTCAACTGGATGTACAGCTACAAGCGCAAACAGAACTAAAA CAAAGTAAAGAGCAACTAAACTCGGTGCTTAACTCTGCTCACAATTTAATCTTTATTAATAATATCAAAGGTGAGTTTAC CTTAGTGAATGATCAATTCTGTCGCACTCTATCACGCAAGCGTGAAGATATTATAGGAGTGAAGGATCGCCTCATAATGC CAAGAGAGGTTGCACAGATAAACCATGAAAAAGATCTTAGCGTCATCGACAGTAGACTCGAATTAAGCTATGAACAAACC TTTCCAGCAGACGGGAAACAGCATACTTACCTCGTGACCAAGTTTCCAATTATGGATAGCCAACAACAAGTTAGCGCTGT TGGAACCATCGCCTTTGATATAAGCGCAACCAAGGAGATAGAGCTTAAGAATAAAGCTCGGTTTGAAATTCTTAGAAGGG AAACATCGGATAATACCCGCTTTATTGAAAAGCTTGAGCAGACTAATAAGCGCCTACTCAATGAAAGTGAACGGGTTAAG CTAGAAACCAATCGTAGTACTAGCTTTGAGCAGGTAAAACTTGAGAATCAAGCACTGTACCCTTCGCTTGTCGCAGCTAT CGTAAAACCTATCTTTAGAAAACAAGATGATTTAGCTGCAAACGCATACAAGTTGGCAAATGGCGAATTGGACGTAATTG ATTTTAATATCGCATTAGCCGACCAAACCGTGCAATTAAGGCACCTAGAGTACCTGTTTTCAGCCCAAGATTATGTCGCG AAACCTATAGACTTAGTATTATTGCTTGAGCATATTGTTGCCCTATTACATCAAAAGCTAGCTGACAAGAAAATTGAACT CACCATAAATAGCGATAGTCGACTCATCGTTGACGGTGTTCATTGGCATTTTTTACTGATTTTTTACCGCGCTATTAGCA ATACCATTACCGACGCGTTTAATCAGCGAAACAAAACGCAATACATCAAGGTAGAACTAAGCAAAGACAATCATCAAGTC CTGATGCGTATTTATGATAACGGTAAAGGTTTCGATGAGAGCAAGTTAGCCGCTCTACGGCAAGTGCTAAAAAATAACGA AGTCAAAGGAACCCTCTCGTCGCTATCAGTTTGGTTAAAGAGTGAATTTAAGGGGCAAGTTACCGTCACGCGTTTGGAGC AAGAAATGGACTACAAAACATTAATAACTTATAAGTTGATGGTTGGGACTAATACAACCAATACAACCAATACAACCAAT ACACTTTAG
Upstream 100 bases:
>100_bases AAGACTTGTATAATTAGCTCAACATCAATTCCAAGCTTCATTCCTTTTTCAGTATGGATACTAATTTAAGGGGATAGTCT TAATCGAGCAAAGAATAATA
Downstream 100 bases:
>100_bases CTTAAATAAAAAAGGCCGCACATTTATTGTGCGGCCTTAGATTGATTTTATCGACTCTTTTAACGTGATACATCCACGAT GTAGTGCCCTTGTAGCCAGT
Product: putative PAS/PAC sensor protein
Products: NA
Alternate protein names: PAS/PAC Sensor Protein; Sensor Histidine Kinase; Methyl-Accepting Chemotaxis Protein; Methyl-Accepting Chemotaxis Receptor Protein; Sensory Box Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase; Methyl-Accepting Chemotaxis Transducer; PAS/PAC Sensor Signal Transduction Histidine Kinase; Methyl-Accepting Chemotaxis Sensory Transducer; PAS Domain-Containing Protein; Fog Ggdef Domain Containing Protein; Sensory Histidine Kinase; Two-Component Histidine Kinase; GGDEF Domain-Containing Protein; Sensory Box Protein; Positive Regulator Of Sigma-B Activity; Chemotaxis Sensory Transducer; Signal Transduction Histidine Kinase Sensor; ATPase Histidine Kinase- DNA Gyrase B- And
Number of amino acids: Translated: 882; Mature: 881
Protein sequence:
>882_residues MTKSSMRRTKLTDWRSSLPMQFMLVQLVVAAVIIIASVWFLKSIETDRLIDNQQSLSINLGKTIAAKLQQKTNKIENLAV SLGTLGELYQQQPKQLNLAVPALLDQPGQQEVILGGGVWPEPFAFDSKKQKNSYFWARDFAGELIQVNDYNAATIPPYYL ENWYIPAKYYPTDTTYWSKSYIDPFTQIPMITASVPMWSEHQFIGVSTVDIALSSLDNFFTTAISSQGGYVFALDQQNRL LSYPDYNLEDAVQNNSRELFQPFSTFSKNHPGFKPLQETIEKIDADFIRVASNTKAYDDKQLKNVIANVPAHERPKLIAL INQNANNKLKQVELVASVKLDNDPRLKEPVIVTVFLMPGTYWKIVLVTPLSSITYNEQSLANSIGIYLVSIQIVALMLLF IMQNSLFIAPISRMVKALNDNNAAKIELEATTRHDEIGMLAKAFSSRTRQLEIALASLDATNLALELQLDVQLQAQTELK QSKEQLNSVLNSAHNLIFINNIKGEFTLVNDQFCRTLSRKREDIIGVKDRLIMPREVAQINHEKDLSVIDSRLELSYEQT FPADGKQHTYLVTKFPIMDSQQQVSAVGTIAFDISATKEIELKNKARFEILRRETSDNTRFIEKLEQTNKRLLNESERVK LETNRSTSFEQVKLENQALYPSLVAAIVKPIFRKQDDLAANAYKLANGELDVIDFNIALADQTVQLRHLEYLFSAQDYVA KPIDLVLLLEHIVALLHQKLADKKIELTINSDSRLIVDGVHWHFLLIFYRAISNTITDAFNQRNKTQYIKVELSKDNHQV LMRIYDNGKGFDESKLAALRQVLKNNEVKGTLSSLSVWLKSEFKGQVTVTRLEQEMDYKTLITYKLMVGTNTTNTTNTTN TL
Sequences:
>Translated_882_residues MTKSSMRRTKLTDWRSSLPMQFMLVQLVVAAVIIIASVWFLKSIETDRLIDNQQSLSINLGKTIAAKLQQKTNKIENLAV SLGTLGELYQQQPKQLNLAVPALLDQPGQQEVILGGGVWPEPFAFDSKKQKNSYFWARDFAGELIQVNDYNAATIPPYYL ENWYIPAKYYPTDTTYWSKSYIDPFTQIPMITASVPMWSEHQFIGVSTVDIALSSLDNFFTTAISSQGGYVFALDQQNRL LSYPDYNLEDAVQNNSRELFQPFSTFSKNHPGFKPLQETIEKIDADFIRVASNTKAYDDKQLKNVIANVPAHERPKLIAL INQNANNKLKQVELVASVKLDNDPRLKEPVIVTVFLMPGTYWKIVLVTPLSSITYNEQSLANSIGIYLVSIQIVALMLLF IMQNSLFIAPISRMVKALNDNNAAKIELEATTRHDEIGMLAKAFSSRTRQLEIALASLDATNLALELQLDVQLQAQTELK QSKEQLNSVLNSAHNLIFINNIKGEFTLVNDQFCRTLSRKREDIIGVKDRLIMPREVAQINHEKDLSVIDSRLELSYEQT FPADGKQHTYLVTKFPIMDSQQQVSAVGTIAFDISATKEIELKNKARFEILRRETSDNTRFIEKLEQTNKRLLNESERVK LETNRSTSFEQVKLENQALYPSLVAAIVKPIFRKQDDLAANAYKLANGELDVIDFNIALADQTVQLRHLEYLFSAQDYVA KPIDLVLLLEHIVALLHQKLADKKIELTINSDSRLIVDGVHWHFLLIFYRAISNTITDAFNQRNKTQYIKVELSKDNHQV LMRIYDNGKGFDESKLAALRQVLKNNEVKGTLSSLSVWLKSEFKGQVTVTRLEQEMDYKTLITYKLMVGTNTTNTTNTTN TL >Mature_881_residues TKSSMRRTKLTDWRSSLPMQFMLVQLVVAAVIIIASVWFLKSIETDRLIDNQQSLSINLGKTIAAKLQQKTNKIENLAVS LGTLGELYQQQPKQLNLAVPALLDQPGQQEVILGGGVWPEPFAFDSKKQKNSYFWARDFAGELIQVNDYNAATIPPYYLE NWYIPAKYYPTDTTYWSKSYIDPFTQIPMITASVPMWSEHQFIGVSTVDIALSSLDNFFTTAISSQGGYVFALDQQNRLL SYPDYNLEDAVQNNSRELFQPFSTFSKNHPGFKPLQETIEKIDADFIRVASNTKAYDDKQLKNVIANVPAHERPKLIALI NQNANNKLKQVELVASVKLDNDPRLKEPVIVTVFLMPGTYWKIVLVTPLSSITYNEQSLANSIGIYLVSIQIVALMLLFI MQNSLFIAPISRMVKALNDNNAAKIELEATTRHDEIGMLAKAFSSRTRQLEIALASLDATNLALELQLDVQLQAQTELKQ SKEQLNSVLNSAHNLIFINNIKGEFTLVNDQFCRTLSRKREDIIGVKDRLIMPREVAQINHEKDLSVIDSRLELSYEQTF PADGKQHTYLVTKFPIMDSQQQVSAVGTIAFDISATKEIELKNKARFEILRRETSDNTRFIEKLEQTNKRLLNESERVKL ETNRSTSFEQVKLENQALYPSLVAAIVKPIFRKQDDLAANAYKLANGELDVIDFNIALADQTVQLRHLEYLFSAQDYVAK PIDLVLLLEHIVALLHQKLADKKIELTINSDSRLIVDGVHWHFLLIFYRAISNTITDAFNQRNKTQYIKVELSKDNHQVL MRIYDNGKGFDESKLAALRQVLKNNEVKGTLSSLSVWLKSEFKGQVTVTRLEQEMDYKTLITYKLMVGTNTTNTTNTTNT L
Specific function: Member Of The Two-Component Regulatory System Arcb/Arca. Sensor-Regulator Protein For Anaerobic Repression Of The Arc Modulon. Activates Arca Via A Four-Step Phosphorelay. Arcb Can Also Dephosphorylate Arca By A Reverse Phosphorelay Involving His- 717 And
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.3.- [C]
Molecular weight: Translated: 100261; Mature: 100130
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: PS50112 PAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKSSMRRTKLTDWRSSLPMQFMLVQLVVAAVIIIASVWFLKSIETDRLIDNQQSLSINL CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEC GKTIAAKLQQKTNKIENLAVSLGTLGELYQQQPKQLNLAVPALLDQPGQQEVILGGGVWP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCEEEEECCCCC EPFAFDSKKQKNSYFWARDFAGELIQVNDYNAATIPPYYLENWYIPAKYYPTDTTYWSKS CCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHCCEEECCEECCCCCCCCCHH YIDPFTQIPMITASVPMWSEHQFIGVSTVDIALSSLDNFFTTAISSQGGYVFALDQQNRL HCCCHHHCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCE LSYPDYNLEDAVQNNSRELFQPFSTFSKNHPGFKPLQETIEKIDADFIRVASNTKAYDDK ECCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHH QLKNVIANVPAHERPKLIALINQNANNKLKQVELVASVKLDNDPRLKEPVIVTVFLMPGT HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHEEEEEEEEECCCCCCCCCEEEEEEECCCC YWKIVLVTPLSSITYNEQSLANSIGIYLVSIQIVALMLLFIMQNSLFIAPISRMVKALND EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCC NNAAKIELEATTRHDEIGMLAKAFSSRTRQLEIALASLDATNLALELQLDVQLQAQTELK CCCEEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEEEEHHHHHH QSKEQLNSVLNSAHNLIFINNIKGEFTLVNDQFCRTLSRKREDIIGVKDRLIMPREVAQI HHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCHHHHHC NHEKDLSVIDSRLELSYEQTFPADGKQHTYLVTKFPIMDSQQQVSAVGTIAFDISATKEI CCCCCHHHHHHHHHCCCHHCCCCCCCCEEEEEEECCCCCCHHHHHHHEEEEEEECCCCEE ELKNKARFEILRRETSDNTRFIEKLEQTNKRLLNESERVKLETNRSTSFEQVKLENQALY EECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEECCCCHH PSLVAAIVKPIFRKQDDLAANAYKLANGELDVIDFNIALADQTVQLRHLEYLFSAQDYVA HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEECCCHHHHHHHHHHHCCHHHHC KPIDLVLLLEHIVALLHQKLADKKIELTINSDSRLIVDGVHWHFLLIFYRAISNTITDAF CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHH NQRNKTQYIKVELSKDNHQVLMRIYDNGKGFDESKLAALRQVLKNNEVKGTLSSLSVWLK HCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHH SEFKGQVTVTRLEQEMDYKTLITYKLMVGTNTTNTTNTTNTL HCCCCCEEEEEHHHHCCCEEEEEEEEEEECCCCCCCCCCCCC >Mature Secondary Structure TKSSMRRTKLTDWRSSLPMQFMLVQLVVAAVIIIASVWFLKSIETDRLIDNQQSLSINL CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEC GKTIAAKLQQKTNKIENLAVSLGTLGELYQQQPKQLNLAVPALLDQPGQQEVILGGGVWP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCEEEEECCCCC EPFAFDSKKQKNSYFWARDFAGELIQVNDYNAATIPPYYLENWYIPAKYYPTDTTYWSKS CCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCHHHCCEEECCEECCCCCCCCCHH YIDPFTQIPMITASVPMWSEHQFIGVSTVDIALSSLDNFFTTAISSQGGYVFALDQQNRL HCCCHHHCCEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCE LSYPDYNLEDAVQNNSRELFQPFSTFSKNHPGFKPLQETIEKIDADFIRVASNTKAYDDK ECCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHEEECCCCCCCCHH QLKNVIANVPAHERPKLIALINQNANNKLKQVELVASVKLDNDPRLKEPVIVTVFLMPGT HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHEEEEEEEEECCCCCCCCCEEEEEEECCCC YWKIVLVTPLSSITYNEQSLANSIGIYLVSIQIVALMLLFIMQNSLFIAPISRMVKALND EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHCC NNAAKIELEATTRHDEIGMLAKAFSSRTRQLEIALASLDATNLALELQLDVQLQAQTELK CCCEEEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEEEEHHHHHH QSKEQLNSVLNSAHNLIFINNIKGEFTLVNDQFCRTLSRKREDIIGVKDRLIMPREVAQI HHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCHHHHHC NHEKDLSVIDSRLELSYEQTFPADGKQHTYLVTKFPIMDSQQQVSAVGTIAFDISATKEI CCCCCHHHHHHHHHCCCHHCCCCCCCCEEEEEEECCCCCCHHHHHHHEEEEEEECCCCEE ELKNKARFEILRRETSDNTRFIEKLEQTNKRLLNESERVKLETNRSTSFEQVKLENQALY EECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHEEECCCCHH PSLVAAIVKPIFRKQDDLAANAYKLANGELDVIDFNIALADQTVQLRHLEYLFSAQDYVA HHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEECCCHHHHHHHHHHHCCHHHHC KPIDLVLLLEHIVALLHQKLADKKIELTINSDSRLIVDGVHWHFLLIFYRAISNTITDAF CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHH NQRNKTQYIKVELSKDNHQVLMRIYDNGKGFDESKLAALRQVLKNNEVKGTLSSLSVWLK HCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHH SEFKGQVTVTRLEQEMDYKTLITYKLMVGTNTTNTTNTTNTL HCCCCCEEEEEHHHHCCCEEEEEEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA