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The map label for this gene is hin [H]

Identifier: 167623720

GI number: 167623720

Start: 2141818

End: 2142375

Strand: Reverse

Name: hin [H]

Synonym: Shal_1790

Alternate gene names: 167623720

Gene position: 2142375-2141818 (Counterclockwise)

Preceding gene: 167623725

Following gene: 167623718

Centisome position: 40.99

GC content: 40.14

Gene sequence:

>558_bases
ATGCAATACATCTATGCTCGAACATCAACTAAAGACCAAAATGTTGATCAGCAGATCATCTACCTCCAATCTCGGTACAA
GGCAGATAAGGTGTTCTCTGACAAATCTACAGGGAAATCACTAGATCGGCCTAGCTTCAATCAGTTACGTAATACTATCG
CAAGGGGCGACTCAATCATCGTTCAAGATTTATCGCGTATTGGACGAAACACAATGGAGGTAATTAGCTTTGTTGAAGAG
ATGACTCAGAAAGGGGTTAGCATCAACATCGATGATCTTGGTCAAATAGATATCACCTCTTCAGCAGGAAAAATGGTGCT
AACAACCTTAGCAGCGGTTGCAACTATGCAAAGAGAGCAAATGTTAGAGAAGCAAGCAATAGGAATTGAGACAGCTAAAA
AAGAAGGTAAGTTCAAAGGAAAACAGCAAAGTCAGAAAACTATTGATAAATGTGAACAGGCACTAAAATACACTAGCAAA
GGTTTATCTAAGGAAGCAGCAGCAAAGGCAGCTGGCGTGGGTATAGCCACCTTATATCGCTATATAAACCAACAATAA

Upstream 100 bases:

>100_bases
ATCCGATAACCCTTAATCACTCTATCACATAGACTTTACAGACCTATACGATAGAGTTATCATTTAAGTCCTATATGATA
GAGGAAGAAGGACAATCTCA

Downstream 100 bases:

>100_bases
CTCATTACTTTTATAAAACTTATTGAAACTAGCATCCGATACGAGTATTATCGCTAGCTTAAAATATATCAAACATGAAC
GTTGCGAAGCTTAGCTCCTT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQYIYARTSTKDQNVDQQIIYLQSRYKADKVFSDKSTGKSLDRPSFNQLRNTIARGDSIIVQDLSRIGRNTMEVISFVEE
MTQKGVSINIDDLGQIDITSSAGKMVLTTLAAVATMQREQMLEKQAIGIETAKKEGKFKGKQQSQKTIDKCEQALKYTSK
GLSKEAAAKAAGVGIATLYRYINQQ

Sequences:

>Translated_185_residues
MQYIYARTSTKDQNVDQQIIYLQSRYKADKVFSDKSTGKSLDRPSFNQLRNTIARGDSIIVQDLSRIGRNTMEVISFVEE
MTQKGVSINIDDLGQIDITSSAGKMVLTTLAAVATMQREQMLEKQAIGIETAKKEGKFKGKQQSQKTIDKCEQALKYTSK
GLSKEAAAKAAGVGIATLYRYINQQ
>Mature_185_residues
MQYIYARTSTKDQNVDQQIIYLQSRYKADKVFSDKSTGKSLDRPSFNQLRNTIARGDSIIVQDLSRIGRNTMEVISFVEE
MTQKGVSINIDDLGQIDITSSAGKMVLTTLAAVATMQREQMLEKQAIGIETAKKEGKFKGKQQSQKTIDKCEQALKYTSK
GLSKEAAAKAAGVGIATLYRYINQQ

Specific function: A DNA fragment of approximately 900 base pairs, adjacent to the fljB (H2) gene, which specifies the synthesis of phase-2 flagellin, can exist in either orientation with respect to fljB. The orientation of the inversion region controls expression of fljB.

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=177, Percent_Identity=31.0734463276836, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787827, Length=144, Percent_Identity=34.0277777777778, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787638, Length=144, Percent_Identity=34.0277777777778, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20601; Mature: 20601

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYIYARTSTKDQNVDQQIIYLQSRYKADKVFSDKSTGKSLDRPSFNQLRNTIARGDSII
CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHH
VQDLSRIGRNTMEVISFVEEMTQKGVSINIDDLGQIDITSSAGKMVLTTLAAVATMQREQ
HHHHHHHCHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
MLEKQAIGIETAKKEGKFKGKQQSQKTIDKCEQALKYTSKGLSKEAAAKAAGVGIATLYR
HHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YINQQ
HHCCC
>Mature Secondary Structure
MQYIYARTSTKDQNVDQQIIYLQSRYKADKVFSDKSTGKSLDRPSFNQLRNTIARGDSII
CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHH
VQDLSRIGRNTMEVISFVEEMTQKGVSINIDDLGQIDITSSAGKMVLTTLAAVATMQREQ
HHHHHHHCHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
MLEKQAIGIETAKKEGKFKGKQQSQKTIDKCEQALKYTSKGLSKEAAAKAAGVGIATLYR
HHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YINQQ
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8423149 [H]