| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fliJ [C]
Identifier: 167623383
GI number: 167623383
Start: 1750952
End: 1751398
Strand: Direct
Name: fliJ [C]
Synonym: Shal_1452
Alternate gene names: 167623383
Gene position: 1750952-1751398 (Clockwise)
Preceding gene: 167623382
Following gene: 167623384
Centisome position: 33.5
GC content: 47.43
Gene sequence:
>447_bases ATGGCTAAACCAGATCCACTGCACATGGTGCTAAAGTTAACGCAAGATGCCGAAGAGCAGGCTTCATTGCAGCTTCGCTC GGCGCAGCTTGAGCTGCAAAGGCGTCAAAACCAGCTTGAAGCGCTACAAAACTATCGCCTCGACTATATGAAACAGATGG AGCAACAACAGGGACAAAGCATTAGCGCTAGCCATTATCACCAATTTCATCAATTCGTTCGCCAAGTCGATGCCGCTATC GTGCAGCAGGTCAATGCCGTAAAAGATGCCGATAATCAAAGGCAACACCGGCAAGTGTACTGGCAAGAGAAGCAACAAAA ACGTAAAGCGGTGGAGCTGTTATTAGCGAATAAAGCCGAGAAAGCAAAACTTGCTGAATTACGAGCAGAGCAAAAAATGG TGGATGAATTCGCCTCACAGCAGTTCTATCGTAAGCGGCAGCGTTAA
Upstream 100 bases:
>100_bases GTTGGGGGCACAATGCCAGGCTTAACTTTTAAGCAGACCTTAGCCACTCAGACGTTAGCATATCAATGTGCGAGCAATAA CAGTTTAGGCGCATCTTATT
Downstream 100 bases:
>100_bases GGTTAACTGTTAACGGGTATCAATCACCCATTTTAGCGTTGCACAGCGTTAGCTATTCAATTTCTACTAGCAGTTAACTT CCCCCCTCTTGTTGACGATA
Product: flagellar export protein FliJ
Products: NA
Alternate protein names: Flagellar Protein FliJ; Flagellar Export FliJ
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MAKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQSISASHYHQFHQFVRQVDAAI VQQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAEKAKLAELRAEQKMVDEFASQQFYRKRQR
Sequences:
>Translated_148_residues MAKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQSISASHYHQFHQFVRQVDAAI VQQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAEKAKLAELRAEQKMVDEFASQQFYRKRQR >Mature_147_residues AKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQSISASHYHQFHQFVRQVDAAIV QQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAEKAKLAELRAEQKMVDEFASQQFYRKRQR
Specific function: The Flij Protein Is A Flagellar Protein That Affects Chemotactic Events. Mutations In Flij Results In Failure To Respond To Chemotactic Stimuli. [C]
COG id: COG2882
COG function: function code NUO; Flagellar biosynthesis chaperone
Gene ontology:
Cell location: Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17646; Mature: 17515
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ISASHYHQFHQFVRQVDAAIVQQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH KAKLAELRAEQKMVDEFASQQFYRKRQR HHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKPDPLHMVLKLTQDAEEQASLQLRSAQLELQRRQNQLEALQNYRLDYMKQMEQQQGQS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC ISASHYHQFHQFVRQVDAAIVQQVNAVKDADNQRQHRQVYWQEKQQKRKAVELLLANKAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH KAKLAELRAEQKMVDEFASQQFYRKRQR HHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA