| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623353
Identifier: 167623353
GI number: 167623353
Start: 1720190
End: 1720615
Strand: Reverse
Name: 167623353
Synonym: Shal_1422
Alternate gene names: NA
Gene position: 1720615-1720190 (Counterclockwise)
Preceding gene: 167623354
Following gene: 167623350
Centisome position: 32.92
GC content: 42.72
Gene sequence:
>426_bases ATGACAAATTTATCTCAACTCCTTAGCTCACAACACCAAGTGTTGACTGAGCTAAATTCGGTTATTAGCCAGGAAAAACA AGCCTTGCATGCACAGCAAGCCGATGTTTTGTTGTCGTTAGCCAGCACTAAGGCAAACCTATTGGCAAGCCTGAAGCAAA ATGATGAGATAATTGCGCAGCAGCCCGATCTTGCCTTGTTAAATACAGACCCAGAGTTGTCTCAGCAAGTGAGTCACGCA AAGGCATTATTGGCCGAGTGCCAACAGCGAAATGCAGAAAATGAATCGTTAATTGAATTGAGTTTAGCCAGCTTAAATCG ATTTTCACAAGCGTTACAGGTCAGCCGTAACGCGTCTAGCCTGACTTATGATGGTAAAGGCAAAACCTCCAGTATTTCAA CGCTTGGAAATAATTTAAAAGCGTAA
Upstream 100 bases:
>100_bases AAATGAGCTTAAAGACTTAAGTTAAGCTGTATCTACTCGCTATAAGCCATAACGGGTCAAAAGCTGCGAACTCAATAGAG CGAAAATTAACAAGGCCATT
Downstream 100 bases:
>100_bases AAGAAGGCCCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTAAAGCCAAGACGAACGGCCTGCGGCCTTACGACACG TGACTTCGCCACTACGGAAC
Product: FlgN family protein
Products: NA
Alternate protein names: Flagellar Biosynthetic Protein FlgN; Polar Flagellar FlgN; Polar Flagellar FlgN-Like Protein; Flagellar Biosynthesis/Type III Secretory Pathway Chaperone; Chaperone FlgN
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MTNLSQLLSSQHQVLTELNSVISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQQPDLALLNTDPELSQQVSHA KALLAECQQRNAENESLIELSLASLNRFSQALQVSRNASSLTYDGKGKTSSISTLGNNLKA
Sequences:
>Translated_141_residues MTNLSQLLSSQHQVLTELNSVISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQQPDLALLNTDPELSQQVSHA KALLAECQQRNAENESLIELSLASLNRFSQALQVSRNASSLTYDGKGKTSSISTLGNNLKA >Mature_140_residues TNLSQLLSSQHQVLTELNSVISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQQPDLALLNTDPELSQQVSHAK ALLAECQQRNAENESLIELSLASLNRFSQALQVSRNASSLTYDGKGKTSSISTLGNNLKA
Specific function: Unknown
COG id: COG3418
COG function: function code NUO; Flagellar biosynthesis/type III secretory pathway chaperone
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15209; Mature: 15078
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLSQLLSSQHQVLTELNSVISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC QPDLALLNTDPELSQQVSHAKALLAECQQRNAENESLIELSLASLNRFSQALQVSRNASS CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTYDGKGKTSSISTLGNNLKA CEECCCCCCHHHHHHHCCCCC >Mature Secondary Structure TNLSQLLSSQHQVLTELNSVISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEC QPDLALLNTDPELSQQVSHAKALLAECQQRNAENESLIELSLASLNRFSQALQVSRNASS CCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC LTYDGKGKTSSISTLGNNLKA CEECCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA