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The map label for this gene is 167623252

Identifier: 167623252

GI number: 167623252

Start: 1598152

End: 1599168

Strand: Reverse

Name: 167623252

Synonym: Shal_1319

Alternate gene names: NA

Gene position: 1599168-1598152 (Counterclockwise)

Preceding gene: 167623253

Following gene: 167623249

Centisome position: 30.59

GC content: 48.28

Gene sequence:

>1017_bases
ATGGACAATGCAGCATTAGCCGCCACCGAAGAGTTAGCAACCGAAACAGAAACGGCTAACGCGCCAGTGGTGTTTAGTTT
ACCCGAGCAAGTGATGCCTAACATGTGGCTCACCGATTATGATTCACTGTATTACAACGACGGTGAACAATATTGGGAAC
CGCCCGTTGATAGACATTTGCTGGCTAACTTAACCCGTCGCAATGCCCAACATGGCGGCATAGTGCAAAGCCGCGCCAAT
ATGGCGACTAGTCGTTTTGTCTCTGGCAGCATGACTGCCCAGCATGTTGAGGCTACATTTTTAAACTTAGTGCAATTTGG
TGATGTGGCACTGCTTAAAGTGCGCAATGGTTTTAGGCAGGTGGTGCGCCTGTTCCCATTACCTAGCTACCGAACCCGCG
TGGGTAGTGATGGCGGCGCGGTAGTGCTTGAGCGTAATAACCAAGTAAAGCGCTATAAAGCCAAAGACATTATTTGGGTG
CGCCAGTACGACCCAGTGCAGCAAGTCTATGGTTGCCCTGATTATCTCGGAGGGTTGCAAGCGGCACTGCTCAATGAAGA
TGCCACACTGTTTCGCCGTAAGTACTACATCAACGGCGCGCACATGGGCTTTATTATGTATGCCACCGACCCAAACTTAG
ATGCTGATGTCGAGAAAGACATTAAAGAGAAGATCCAAGATTCTAAAGGCGTGGGTAATTTTAAGTCGCTATTTGTCAAT
ATTCCCAACGGTAAAGAGAAAGGTTTGCAGATCATCCCCGTGGGTAATTTTGAATCGAAAGACGAGTTTATGAACGTGAA
GAACGTCAGCTCCCAAGACGTACTAAACGCCCATCGTTTCCCTCCTGGCTTAGCGGGCATTATCCCATCTAACACCGCAG
GCCTTGGCGACCCGTCAAAGTATGATGAGGTTTACTATAAAAATGAGACTAAGCCACTGATCAGAAAATTAGTCGATGCT
GTGGCGCAAGATAGCGAAGTCGGGGGCAGGCTGTCACTAGTGTTTGATTTGGGATAA

Upstream 100 bases:

>100_bases
CCAGCCGCGATAACGTAACCGGCCACGCCGATGTGTTTTTTGCCATCGCCCACGCCGTTATTAACGAACCACTGAACTTT
GCACATAAGAGAACATCATC

Downstream 100 bases:

>100_bases
AGGCTGTAGTGTAGCTACACAGCTACACTACTCGGTGCGTTTGCGTTACACCCGCTTAACAGGCAAATAGTGGTTAGCTA
TGATTGCGAAGTGATGGCCA

Product: PBSX family phage portal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDNAALAATEELATETETANAPVVFSLPEQVMPNMWLTDYDSLYYNDGEQYWEPPVDRHLLANLTRRNAQHGGIVQSRAN
MATSRFVSGSMTAQHVEATFLNLVQFGDVALLKVRNGFRQVVRLFPLPSYRTRVGSDGGAVVLERNNQVKRYKAKDIIWV
RQYDPVQQVYGCPDYLGGLQAALLNEDATLFRRKYYINGAHMGFIMYATDPNLDADVEKDIKEKIQDSKGVGNFKSLFVN
IPNGKEKGLQIIPVGNFESKDEFMNVKNVSSQDVLNAHRFPPGLAGIIPSNTAGLGDPSKYDEVYYKNETKPLIRKLVDA
VAQDSEVGGRLSLVFDLG

Sequences:

>Translated_338_residues
MDNAALAATEELATETETANAPVVFSLPEQVMPNMWLTDYDSLYYNDGEQYWEPPVDRHLLANLTRRNAQHGGIVQSRAN
MATSRFVSGSMTAQHVEATFLNLVQFGDVALLKVRNGFRQVVRLFPLPSYRTRVGSDGGAVVLERNNQVKRYKAKDIIWV
RQYDPVQQVYGCPDYLGGLQAALLNEDATLFRRKYYINGAHMGFIMYATDPNLDADVEKDIKEKIQDSKGVGNFKSLFVN
IPNGKEKGLQIIPVGNFESKDEFMNVKNVSSQDVLNAHRFPPGLAGIIPSNTAGLGDPSKYDEVYYKNETKPLIRKLVDA
VAQDSEVGGRLSLVFDLG
>Mature_338_residues
MDNAALAATEELATETETANAPVVFSLPEQVMPNMWLTDYDSLYYNDGEQYWEPPVDRHLLANLTRRNAQHGGIVQSRAN
MATSRFVSGSMTAQHVEATFLNLVQFGDVALLKVRNGFRQVVRLFPLPSYRTRVGSDGGAVVLERNNQVKRYKAKDIIWV
RQYDPVQQVYGCPDYLGGLQAALLNEDATLFRRKYYINGAHMGFIMYATDPNLDADVEKDIKEKIQDSKGVGNFKSLFVN
IPNGKEKGLQIIPVGNFESKDEFMNVKNVSSQDVLNAHRFPPGLAGIIPSNTAGLGDPSKYDEVYYKNETKPLIRKLVDA
VAQDSEVGGRLSLVFDLG

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 37689; Mature: 37689

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNAALAATEELATETETANAPVVFSLPEQVMPNMWLTDYDSLYYNDGEQYWEPPVDRHL
CCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEECCCHHHCCCCHHHHH
LANLTRRNAQHGGIVQSRANMATSRFVSGSMTAQHVEATFLNLVQFGDVALLKVRNGFRQ
HHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHH
VVRLFPLPSYRTRVGSDGGAVVLERNNQVKRYKAKDIIWVRQYDPVQQVYGCPDYLGGLQ
HHHHCCCCCHHHHCCCCCCEEEEECCCCCEEEECCCEEEEECCCHHHHHHCCHHHHHHHH
AALLNEDATLFRRKYYINGAHMGFIMYATDPNLDADVEKDIKEKIQDSKGVGNFKSLFVN
HHHHCCCHHHHHHEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE
IPNGKEKGLQIIPVGNFESKDEFMNVKNVSSQDVLNAHRFPPGLAGIIPSNTAGLGDPSK
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
YDEVYYKNETKPLIRKLVDAVAQDSEVGGRLSLVFDLG
HCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
>Mature Secondary Structure
MDNAALAATEELATETETANAPVVFSLPEQVMPNMWLTDYDSLYYNDGEQYWEPPVDRHL
CCCCHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCEEECCCHHHCCCCHHHHH
LANLTRRNAQHGGIVQSRANMATSRFVSGSMTAQHVEATFLNLVQFGDVALLKVRNGFRQ
HHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEHHHHHHHH
VVRLFPLPSYRTRVGSDGGAVVLERNNQVKRYKAKDIIWVRQYDPVQQVYGCPDYLGGLQ
HHHHCCCCCHHHHCCCCCCEEEEECCCCCEEEECCCEEEEECCCHHHHHHCCHHHHHHHH
AALLNEDATLFRRKYYINGAHMGFIMYATDPNLDADVEKDIKEKIQDSKGVGNFKSLFVN
HHHHCCCHHHHHHEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEE
IPNGKEKGLQIIPVGNFESKDEFMNVKNVSSQDVLNAHRFPPGLAGIIPSNTAGLGDPSK
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
YDEVYYKNETKPLIRKLVDAVAQDSEVGGRLSLVFDLG
HCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1701261 [H]