| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623253
Identifier: 167623253
GI number: 167623253
Start: 1599150
End: 1601003
Strand: Reverse
Name: 167623253
Synonym: Shal_1320
Alternate gene names: NA
Gene position: 1601003-1599150 (Counterclockwise)
Preceding gene: 167623277
Following gene: 167623252
Centisome position: 30.63
GC content: 48.92
Gene sequence:
>1854_bases ATGAATACACTGCAGGTCAGTTGGTTTATTTGTTCACTACTTACGGAGTCGAATCACTCACGCATGGCCTACTCTCCTGA AATTCGCGAAGCGGTAAAGCGGCTCTATTTAAGGCGCTGGACACCGGACGAGATCCGTCTCGAACTCGACCTGCCTAATA CGCGGGTGATTTACTTTTGGGCTGACAAATACAGTTGGCGCGATCTGCTGCGCGAGGAAGAAGTCGACGAGGCCATTGCT CGGCGCATTGTGATGCTGACCGATATCGCTGATAAATCTGGCGGGCAACTTAAAGAGCTCGACATGCTGATTGAAAAGCA TGTGAAGCTGAAAAAGCAGCGCTTAATCAGTGAAGGCCATTCGTTCGGTGCTAATGGCAGTACTAAGAACAGTGGCAAAA ATAGCAAAGGCAGCGATCAGCAAAATAATGCAGCGCCAAGCAAGCGTAAAGGTCGTAAACGTAAGAATGACGTTAGCCAT TTAACCGAGGAAGATTTTAAAGCCTGGTACGCTTCATTATTTGAATATCAAAAGGTGATGCATGAAAACCTGCATCGGCG TATTCGTAATATTCTTAAGTCGCGCCAGATTGGTGCCACCTATTACTTTGCCGGTGAAGCATTCGAGCAAGCGGTACTTA CCGGGGATCCGCAAATATTCCTCTCGGCTTCACGTTCGCAGGCCGAAGTATTCCGCACCTATATTGTGCAAATTGCGCAG CAGTTCTTTGAAATAGAATTAACCGGTAACCCGATTGTATTGCACACCGCACACGGTGATGCCGAGCTAAGGTTTCTGTC GACGAATAGCAAAACCGCGCAGAGTTACCACGGCCATGTGTATGTGGATGAATACTTTTGGATAGGCAAGTTTGATGTAC TCAACAAACTAGCCTCTGCTATGGCCACCCATAAAAACTGGCGCAAAACCTACTTTTCTACCCCATCAACCAAAGCGCAC CCCGCTTACAGCTTTTGGACGGGGGATCACTGGCGCCGCGGTATGAGTGATCGCGAAGAGGTGGAGTTTCCCACCTTTGA TGCCATGCGTGACCGTGGCCGGTTTTGCCCCGACAAGCAATGGCGCTATGTGGTCACCATTGAAGATGCCCTTGCTGGCG GTTGTGGACTGTTCGACATTGAGGAGCTGCGCGACGAATACAACGACGATGACTTTAAAAACCTGTTTATGTGCATTTTT GTTGATGATGCCGATAGCGTATTTAAGTTCAGCGACCTTGAAAAATGCATGGTCGAGTCGGCTCGCTGGCAAGATCACAA ACCCAAAGAGCAACGGCCATTTGGCAATCGCGAGGTTTGGCTCGGTTATGACCCATCACGAACGCGCGACAATGCCACCT TAGTAGTGATTGCACCAGGTGAAAAGAAAGGCGAGAAATTCAGAGTACTTGAAAAACACTATTGGCGCGGCTTGAACTTT TCCCATCACGTAAGCGAAATACAAAAAGTCTATGCCCGTTATCGAGTCACTTACATTGGCGTTGATACCACAGGCATTGG CGCGGGCGTGTTCGACTCGATTAGCACCTTATTTCCGCGCGAGGCCACGGCGATTCATTACAGCGTTTCAAGCAAAACTC GCTTAGTACTGAAAATGATTGATGTGGTTGAAAGTGGCCGCATCGAGTGGGACGCCTCCCACAAAGACATTGCCATGAGC TGCTTATCAATACGCAAGACCACCACCGACACAGGCGGGGCTATCACTTTTAAAGCCAGCCGCGATAACGTAACCGGCCA CGCCGATGTGTTTTTTGCCATCGCCCACGCCGTTATTAACGAACCACTGAACTTTGCACATAAGAGAACATCATCATGGA CAATGCAGCATTAG
Upstream 100 bases:
>100_bases AGCTGCAACGGCGCTGGCACTCGGTTTGGTTCGGAGGAATTCGGATATAGGGCTATATCCGAAACAGGCCGAACATTAGT CCGTTATTGCCTTGTAACTT
Downstream 100 bases:
>100_bases CCGCCACCGAAGAGTTAGCAACCGAAACAGAAACGGCTAACGCGCCAGTGGTGTTTAGTTTACCCGAGCAAGTGATGCCT AACATGTGGCTCACCGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Terminase ATPase Subunit; Terminase; Terminase Related Protein; Phage-Related Terminase ATPase Subunit; Bacteriophage Terminase Large Subunit; Fels-2 Prophage Protein; Prophage Large Terminase Protein; Bacteriophage Terminase; Orf16-Like Phage Protein; Phage Terminase ATPase Subunit P; Phage Terminase Subunit GpP; Terminase Large Subunit; Mu-Like Prophage FluMu Protein Gp; DNA-Dependent ATPase Terminase Subunit; Prophage; Terminase ATPase Subunit Bacteriophage Origin; ATPase Subunit Of Terminase; Bacteriophage P2 GPP Capsid Protein; Phage Terminase Subunit; Phage Gene; Terminase Subunit; Phage-Related Terminase; Phage P2 Terminase ATPase Subunit GpP-Like Protein
Number of amino acids: Translated: 617; Mature: 617
Protein sequence:
>617_residues MNTLQVSWFICSLLTESNHSRMAYSPEIREAVKRLYLRRWTPDEIRLELDLPNTRVIYFWADKYSWRDLLREEEVDEAIA RRIVMLTDIADKSGGQLKELDMLIEKHVKLKKQRLISEGHSFGANGSTKNSGKNSKGSDQQNNAAPSKRKGRKRKNDVSH LTEEDFKAWYASLFEYQKVMHENLHRRIRNILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQ QFFEIELTGNPIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASAMATHKNWRKTYFSTPSTKAH PAYSFWTGDHWRRGMSDREEVEFPTFDAMRDRGRFCPDKQWRYVVTIEDALAGGCGLFDIEELRDEYNDDDFKNLFMCIF VDDADSVFKFSDLEKCMVESARWQDHKPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNF SHHVSEIQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSSKTRLVLKMIDVVESGRIEWDASHKDIAMS CLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHAVINEPLNFAHKRTSSWTMQH
Sequences:
>Translated_617_residues MNTLQVSWFICSLLTESNHSRMAYSPEIREAVKRLYLRRWTPDEIRLELDLPNTRVIYFWADKYSWRDLLREEEVDEAIA RRIVMLTDIADKSGGQLKELDMLIEKHVKLKKQRLISEGHSFGANGSTKNSGKNSKGSDQQNNAAPSKRKGRKRKNDVSH LTEEDFKAWYASLFEYQKVMHENLHRRIRNILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQ QFFEIELTGNPIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASAMATHKNWRKTYFSTPSTKAH PAYSFWTGDHWRRGMSDREEVEFPTFDAMRDRGRFCPDKQWRYVVTIEDALAGGCGLFDIEELRDEYNDDDFKNLFMCIF VDDADSVFKFSDLEKCMVESARWQDHKPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNF SHHVSEIQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSSKTRLVLKMIDVVESGRIEWDASHKDIAMS CLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHAVINEPLNFAHKRTSSWTMQH >Mature_617_residues MNTLQVSWFICSLLTESNHSRMAYSPEIREAVKRLYLRRWTPDEIRLELDLPNTRVIYFWADKYSWRDLLREEEVDEAIA RRIVMLTDIADKSGGQLKELDMLIEKHVKLKKQRLISEGHSFGANGSTKNSGKNSKGSDQQNNAAPSKRKGRKRKNDVSH LTEEDFKAWYASLFEYQKVMHENLHRRIRNILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQ QFFEIELTGNPIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASAMATHKNWRKTYFSTPSTKAH PAYSFWTGDHWRRGMSDREEVEFPTFDAMRDRGRFCPDKQWRYVVTIEDALAGGCGLFDIEELRDEYNDDDFKNLFMCIF VDDADSVFKFSDLEKCMVESARWQDHKPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNF SHHVSEIQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSSKTRLVLKMIDVVESGRIEWDASHKDIAMS CLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHAVINEPLNFAHKRTSSWTMQH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71302; Mature: 71302
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLQVSWFICSLLTESNHSRMAYSPEIREAVKRLYLRRWTPDEIRLELDLPNTRVIYFW CCCEEHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE ADKYSWRDLLREEEVDEAIARRIVMLTDIADKSGGQLKELDMLIEKHVKLKKQRLISEGH ECCCCHHHHHHHHHHHHHHHHHEEHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SFGANGSTKNSGKNSKGSDQQNNAAPSKRKGRKRKNDVSHLTEEDFKAWYASLFEYQKVM CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HENLHRRIRNILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQ HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH QFFEIELTGNPIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASA HHEEEEECCCEEEEEECCCCCEEEEEECCCCCHHCCCCEEEEECEEECCHHHHHHHHHHH MATHKNWRKTYFSTPSTKAHPAYSFWTGDHWRRGMSDREEVEFPTFDAMRDRGRFCPDKQ HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCCHHCCCCCHHHHHHCCCCCCCCC WRYVVTIEDALAGGCGLFDIEELRDEYNDDDFKNLFMCIFVDDADSVFKFSDLEKCMVES CEEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH ARWQDHKPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNF HCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCH SHHVSEIQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSSKTRLVLKMI HHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH DVVESGRIEWDASHKDIAMSCLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHAVIN HHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH EPLNFAHKRTSSWTMQH CCHHHHHHCCCCCCCCC >Mature Secondary Structure MNTLQVSWFICSLLTESNHSRMAYSPEIREAVKRLYLRRWTPDEIRLELDLPNTRVIYFW CCCEEHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE ADKYSWRDLLREEEVDEAIARRIVMLTDIADKSGGQLKELDMLIEKHVKLKKQRLISEGH ECCCCHHHHHHHHHHHHHHHHHEEHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SFGANGSTKNSGKNSKGSDQQNNAAPSKRKGRKRKNDVSHLTEEDFKAWYASLFEYQKVM CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HENLHRRIRNILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQ HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH QFFEIELTGNPIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASA HHEEEEECCCEEEEEECCCCCEEEEEECCCCCHHCCCCEEEEECEEECCHHHHHHHHHHH MATHKNWRKTYFSTPSTKAHPAYSFWTGDHWRRGMSDREEVEFPTFDAMRDRGRFCPDKQ HHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHCCCCCCHHCCCCCHHHHHHCCCCCCCCC WRYVVTIEDALAGGCGLFDIEELRDEYNDDDFKNLFMCIFVDDADSVFKFSDLEKCMVES CEEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH ARWQDHKPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNF HCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCH SHHVSEIQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSSKTRLVLKMI HHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH DVVESGRIEWDASHKDIAMSCLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHAVIN HHHHCCCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH EPLNFAHKRTSSWTMQH CCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA