| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623229
Identifier: 167623229
GI number: 167623229
Start: 1577886
End: 1580855
Strand: Direct
Name: 167623229
Synonym: Shal_1296
Alternate gene names: NA
Gene position: 1577886-1580855 (Clockwise)
Preceding gene: 167623228
Following gene: 167623233
Centisome position: 30.19
GC content: 42.59
Gene sequence:
>2970_bases GTGGTTAAGGTAATGCGTTACTATTTACTATTGTTATTGATACTTACCGATAAAGTGATTGCGTTTGAACTTGTTAATGA TGTAACGTATTTTCCATCTGTAGTCCAAGGGCATCATGGCAATAGTAAGTATTCATGCGATGGTATTGATTCATTTCAAT TTGAACAAAATGGTTCTTCAAAGATTTACGGAACTTTGGATAAAGATCTAATGTTTTGCAGTAACAATATAGGCCACGGA TTGCCAAGTAATGGCTGTGATACCTCTTTAGAAGGTTATAGAACCTGTTCTGTAACTGGAGTTGATATTAAAGGTATCGA TTTAACTGGTGAAAATGAATTTAAATACAGTTCGGTAAGTGATGGTCAAATTCACTCATGTTCGAGTGGGCAAAATGTTA TCTTAGGTTTAAATGAACAGACCGAGTTTAGTAGAGTTACACTTTATAGTCCATGTGTAGTTACTTTTTCATCAAATCAT AGCGAGTATAGAGTCAAAGATGTTGAAATGGGTGGCGGGGCGAAAATTGTTTTGTCTTCTGGAGACTACTATTTTGAGAG TCTTACTTTAAATAGAGGAGCTAATATTGTAGCTCTTGGTGATGTGCGTATTTTTGTTAAGTCTAAAGTAAATATTACAG ATGCTAAAGTCAATGAATCTGAAATCGATAATTTTATATTGCTCGGATATGATGATATTAATGTTAATGGTGATTCTTAC GTAAAGGGTAAGCTTTATAGTGATAAACATGTTTACCTCAATGGTTCAAGCTTCATAGAAGGACGTGTAACTAGTCGTTA CTTAAGAATGAATGGTAATAGTGTTATTAATCAAAAAAAACAAATACAAAAAAGTCACTTTAGAATCAGTTTTAATTCTG GAGCATTAAGCTGTACTTCGAAATTTATTTCTGTGCAGGCTTGTGCAAATGATAATTGTAGCTCACAGCTAACAGAATCA GCCTTTGTTACCCTGACGAAAAACGGTGCAAATTACAGCGAAGAGACGTTTACGGGTAGTACTAGTACTGAGGTTTGGCA CCCACAAGGTGGCCTGGTTACCCTAGGCTTGGGGGTGACCGTACCTAGTGCAGACTACAGTTGTTATATCGATGGTAGAC TCGTCACCAATGCTCAATGTCAGCTCAACTTTGAAGATAGCGGCATCTATTTTGATATTGATGATTCAACGGCTTGTAAA AACTCCAACAACTTTGAGTTATTTGCGGTTAAGAAAGATCAAGTTACCCAGCAATGTGTACCGTTATTTGCTAATAAAAC TAAGCCTATTTCGATGGTGTTTAACTATATTACGCCAGATGCCGCGGGGATCAACGAGGCTGCCAAGTTAACCATCAATA GTCTCAATACACCTAATGCCAGTAAAGTGATCGATGGCGGCTCAAGTGAGGTGCTTCAAGTTCACTTCGATGCCAATGGT AAAGCGCTGCTCAATGTGAACTACCCTGAAGCGGGTAAGGTGGAGCTTGCGGCAATCTTGACTGAAACGATTAGCTCTAC CGATGGTAGCACCAGTGAAACCTTGATACTCGAACATAGTGATCAATTTGTGGCTAAAGCCGATGGCTTCCATTTCTTTA ATGATTCTGGGCGTGATGGCTGTACGGGGGCAAGTTGCGAGCTGTTTGCCAAGGCAGGCGCTGATTTTAAGATGAACGTA AAGGCGGTTTGTGGTGTCGATGACGGCACGGCTTATAAAGATCGAGTGCCACTTAAAAACTTCCAATTAACAGATTTAAA AATTAAACCTGTACTACAAGCGCCATTAGTCTCGAATGGAGATATTAAAGATGGCAGTCTTGGTGGGCTAGGGCTAACCA GTTTGAGCTTCACTAAGGCTAACAGTGCACCGCTAAGACTGACGGATCAGACATACTTTGAAGTGGGGGCTATGAGTGTT GCACTCGATGGTGAGCTGAATTACCTAGGAGCCTCGATCCCTGAAACCCACTCAAGTAGCGAGATCTTTGGGCGCTTTTC TCCATATTACTTAACCGTGACGGCTAACACTTCTCATCCTGCGGCGCAGTGTGGCAGCTTTACCTATATGGATCAGCCGT TCGGTTTCTCTACCGGTGAAGAACCAACCCTGTCTATCATAGGTAAGAGCAAGAGCGGGGCAATCACCAACAACTACCAA GTTGGTGATTGGTGGCGTTATCATGGCAAGCAGTGGCTAGAACGCAGCTATAGTGATACTTCTGGCGCAACCTCAGCGGA TGGCGCAGCCTTGCTGATTGTGGATGAGTCCCCAATTTCCGGCACTGTGGAATACTATCTGGTTAATGGGACTAATAGTG TGCAACGGGCTTACCTAAGCGGTGCACAGCTGCATTACGGCCGCACTGCATCGCTGGCGACTCCCTTTAATGGTCAGTTT GACTTAGAACTATCAAAGGCTGATGTGACAGATAAGGATGGTATTTGTTATCAAGACAGCGCCGATGCAGCCTGTATTGG CTTTACCTTTGACGATATCGCTAAAGGCGATGTTTTTGCGCTGCGTTACGGGCGGTTTGTGATGCAAAATGCTTATGGCC CATCGTCGGAAGAGCTGCGTCTGGAGGTCGGAACCCAATATGTTGGGGCTAGCGGCGAGTGGCTCACCAATTCAGAAGAT AACTGTTCTGTGTTCGATACTACCAGTGCGACAGAGTCTGCTGATGCAGGTTTATACCTTAAACCTGAGCCAGGTTTGGA AGCTGTACAGGGGTTCACTCAGCCAGTAGAGGGAGGTCAATTTGGTTACATCGGGCTAGGCAAGAGTTTAATCTATTTCC CTGCGCCTAATACGGGTGGTGAGGTAATCTTACAGCAACATGTGAGTAAATGGCTAAAGTTTTATTGGAATTATAATGCC GTTGGTGATTTACAAGATCCTCGTGGCACTGCTCATTTTGGCACTTATCGTGGCCATGACAGGATTATTTCTTGGCGAGA AGTTTATTAA
Upstream 100 bases:
>100_bases GTCGACAGTGTACTATAAAGTTATTGTTTAATGTTAACTGTTTAATTCTGAAGTTTTGAAGTCTTATTGTTTTCTACTTT ATTTATCATGAGGTCATTCT
Downstream 100 bases:
>100_bases GGTGTTTGATGGTCCTGATTACATGAAGAAAAAGTGCTTGGAACTGACCAGGAGTTCTAGGGGCTTACCAAGCGCAAGAA CTTGTGGTGTTAGCGGTATG
Product: MSHA biogenesis protein MshQ
Products: NA
Alternate protein names: PA14 Domain-Containing Protein; VcfQ-Like Protein; Lamg Domain Protein Jellyroll Fold Domain Protein; CUB Domain-Containing Protein
Number of amino acids: Translated: 989; Mature: 989
Protein sequence:
>989_residues MVKVMRYYLLLLLILTDKVIAFELVNDVTYFPSVVQGHHGNSKYSCDGIDSFQFEQNGSSKIYGTLDKDLMFCSNNIGHG LPSNGCDTSLEGYRTCSVTGVDIKGIDLTGENEFKYSSVSDGQIHSCSSGQNVILGLNEQTEFSRVTLYSPCVVTFSSNH SEYRVKDVEMGGGAKIVLSSGDYYFESLTLNRGANIVALGDVRIFVKSKVNITDAKVNESEIDNFILLGYDDINVNGDSY VKGKLYSDKHVYLNGSSFIEGRVTSRYLRMNGNSVINQKKQIQKSHFRISFNSGALSCTSKFISVQACANDNCSSQLTES AFVTLTKNGANYSEETFTGSTSTEVWHPQGGLVTLGLGVTVPSADYSCYIDGRLVTNAQCQLNFEDSGIYFDIDDSTACK NSNNFELFAVKKDQVTQQCVPLFANKTKPISMVFNYITPDAAGINEAAKLTINSLNTPNASKVIDGGSSEVLQVHFDANG KALLNVNYPEAGKVELAAILTETISSTDGSTSETLILEHSDQFVAKADGFHFFNDSGRDGCTGASCELFAKAGADFKMNV KAVCGVDDGTAYKDRVPLKNFQLTDLKIKPVLQAPLVSNGDIKDGSLGGLGLTSLSFTKANSAPLRLTDQTYFEVGAMSV ALDGELNYLGASIPETHSSSEIFGRFSPYYLTVTANTSHPAAQCGSFTYMDQPFGFSTGEEPTLSIIGKSKSGAITNNYQ VGDWWRYHGKQWLERSYSDTSGATSADGAALLIVDESPISGTVEYYLVNGTNSVQRAYLSGAQLHYGRTASLATPFNGQF DLELSKADVTDKDGICYQDSADAACIGFTFDDIAKGDVFALRYGRFVMQNAYGPSSEELRLEVGTQYVGASGEWLTNSED NCSVFDTTSATESADAGLYLKPEPGLEAVQGFTQPVEGGQFGYIGLGKSLIYFPAPNTGGEVILQQHVSKWLKFYWNYNA VGDLQDPRGTAHFGTYRGHDRIISWREVY
Sequences:
>Translated_989_residues MVKVMRYYLLLLLILTDKVIAFELVNDVTYFPSVVQGHHGNSKYSCDGIDSFQFEQNGSSKIYGTLDKDLMFCSNNIGHG LPSNGCDTSLEGYRTCSVTGVDIKGIDLTGENEFKYSSVSDGQIHSCSSGQNVILGLNEQTEFSRVTLYSPCVVTFSSNH SEYRVKDVEMGGGAKIVLSSGDYYFESLTLNRGANIVALGDVRIFVKSKVNITDAKVNESEIDNFILLGYDDINVNGDSY VKGKLYSDKHVYLNGSSFIEGRVTSRYLRMNGNSVINQKKQIQKSHFRISFNSGALSCTSKFISVQACANDNCSSQLTES AFVTLTKNGANYSEETFTGSTSTEVWHPQGGLVTLGLGVTVPSADYSCYIDGRLVTNAQCQLNFEDSGIYFDIDDSTACK NSNNFELFAVKKDQVTQQCVPLFANKTKPISMVFNYITPDAAGINEAAKLTINSLNTPNASKVIDGGSSEVLQVHFDANG KALLNVNYPEAGKVELAAILTETISSTDGSTSETLILEHSDQFVAKADGFHFFNDSGRDGCTGASCELFAKAGADFKMNV KAVCGVDDGTAYKDRVPLKNFQLTDLKIKPVLQAPLVSNGDIKDGSLGGLGLTSLSFTKANSAPLRLTDQTYFEVGAMSV ALDGELNYLGASIPETHSSSEIFGRFSPYYLTVTANTSHPAAQCGSFTYMDQPFGFSTGEEPTLSIIGKSKSGAITNNYQ VGDWWRYHGKQWLERSYSDTSGATSADGAALLIVDESPISGTVEYYLVNGTNSVQRAYLSGAQLHYGRTASLATPFNGQF DLELSKADVTDKDGICYQDSADAACIGFTFDDIAKGDVFALRYGRFVMQNAYGPSSEELRLEVGTQYVGASGEWLTNSED NCSVFDTTSATESADAGLYLKPEPGLEAVQGFTQPVEGGQFGYIGLGKSLIYFPAPNTGGEVILQQHVSKWLKFYWNYNA VGDLQDPRGTAHFGTYRGHDRIISWREVY >Mature_989_residues MVKVMRYYLLLLLILTDKVIAFELVNDVTYFPSVVQGHHGNSKYSCDGIDSFQFEQNGSSKIYGTLDKDLMFCSNNIGHG LPSNGCDTSLEGYRTCSVTGVDIKGIDLTGENEFKYSSVSDGQIHSCSSGQNVILGLNEQTEFSRVTLYSPCVVTFSSNH SEYRVKDVEMGGGAKIVLSSGDYYFESLTLNRGANIVALGDVRIFVKSKVNITDAKVNESEIDNFILLGYDDINVNGDSY VKGKLYSDKHVYLNGSSFIEGRVTSRYLRMNGNSVINQKKQIQKSHFRISFNSGALSCTSKFISVQACANDNCSSQLTES AFVTLTKNGANYSEETFTGSTSTEVWHPQGGLVTLGLGVTVPSADYSCYIDGRLVTNAQCQLNFEDSGIYFDIDDSTACK NSNNFELFAVKKDQVTQQCVPLFANKTKPISMVFNYITPDAAGINEAAKLTINSLNTPNASKVIDGGSSEVLQVHFDANG KALLNVNYPEAGKVELAAILTETISSTDGSTSETLILEHSDQFVAKADGFHFFNDSGRDGCTGASCELFAKAGADFKMNV KAVCGVDDGTAYKDRVPLKNFQLTDLKIKPVLQAPLVSNGDIKDGSLGGLGLTSLSFTKANSAPLRLTDQTYFEVGAMSV ALDGELNYLGASIPETHSSSEIFGRFSPYYLTVTANTSHPAAQCGSFTYMDQPFGFSTGEEPTLSIIGKSKSGAITNNYQ VGDWWRYHGKQWLERSYSDTSGATSADGAALLIVDESPISGTVEYYLVNGTNSVQRAYLSGAQLHYGRTASLATPFNGQF DLELSKADVTDKDGICYQDSADAACIGFTFDDIAKGDVFALRYGRFVMQNAYGPSSEELRLEVGTQYVGASGEWLTNSED NCSVFDTTSATESADAGLYLKPEPGLEAVQGFTQPVEGGQFGYIGLGKSLIYFPAPNTGGEVILQQHVSKWLKFYWNYNA VGDLQDPRGTAHFGTYRGHDRIISWREVY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107426; Mature: 107426
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKVMRYYLLLLLILTDKVIAFELVNDVTYFPSVVQGHHGNSKYSCDGIDSFQFEQNGSS CHHHHHHHHHHHHHHHCHHEEEHHHHHHHHCCHHHCCCCCCCCEECCCCCCEEECCCCCC KIYGTLDKDLMFCSNNIGHGLPSNGCDTSLEGYRTCSVTGVDIKGIDLTGENEFKYSSVS EEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECEEEEEEECCCCCEEECCCC DGQIHSCSSGQNVILGLNEQTEFSRVTLYSPCVVTFSSNHSEYRVKDVEMGGGAKIVLSS CCCEEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEEEEECCCCEEEEEEC GDYYFESLTLNRGANIVALGDVRIFVKSKVNITDAKVNESEIDNFILLGYDDINVNGDSY CCEEEEEEEECCCCCEEEEEEEEEEEEECEEEEECCCCHHHCCCEEEEEEEEEECCCCCE VKGKLYSDKHVYLNGSSFIEGRVTSRYLRMNGNSVINQKKQIQKSHFRISFNSGALSCTS EEEEEECCCEEEECCCCEEECCEEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEE KFISVQACANDNCSSQLTESAFVTLTKNGANYSEETFTGSTSTEVWHPQGGLVTLGLGVT EEEEEEECCCCCCHHHCCCCEEEEEEECCCCCCCCEECCCCCCEEECCCCCEEEEEEEEE VPSADYSCYIDGRLVTNAQCQLNFEDSGIYFDIDDSTACKNSNNFELFAVKKDQVTQQCV ECCCCEEEEECCEEEECCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHH PLFANKTKPISMVFNYITPDAAGINEAAKLTINSLNTPNASKVIDGGSSEVLQVHFDANG HHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHEECCCCCEEEEEEECCCC KALLNVNYPEAGKVELAAILTETISSTDGSTSETLILEHSDQFVAKADGFHFFNDSGRDG CEEEEECCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCCEEEECCCEEEECCCCCCC CTGASCELFAKAGADFKMNVKAVCGVDDGTAYKDRVPLKNFQLTDLKIKPVLQAPLVSNG CCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECEEECCCCCCC DIKDGSLGGLGLTSLSFTKANSAPLRLTDQTYFEVGAMSVALDGELNYLGASIPETHSSS CCCCCCCCCCEEEEEEEECCCCCCEEEECCCEEEEEEEEEEECCCEEEECCCCCCCCCCC EIFGRFSPYYLTVTANTSHPAAQCGSFTYMDQPFGFSTGEEPTLSIIGKSKSGAITNNYQ HHHCCCCCEEEEEEECCCCCHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCC VGDWWRYHGKQWLERSYSDTSGATSADGAALLIVDESPISGTVEYYLVNGTNSVQRAYLS CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHC GAQLHYGRTASLATPFNGQFDLELSKADVTDKDGICYQDSADAACIGFTFDDIAKGDVFA CCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEHHHCCCCCEEE LRYGRFVMQNAYGPSSEELRLEVGTQYVGASGEWLTNSEDNCSVFDTTSATESADAGLYL EECCHHEEECCCCCCCCEEEEEECCEEECCCCCEECCCCCCCEEEECCCCCCCCCCCEEE KPEPGLEAVQGFTQPVEGGQFGYIGLGKSLIYFPAPNTGGEVILQQHVSKWLKFYWNYNA CCCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHEEECCCE VGDLQDPRGTAHFGTYRGHDRIISWREVY ECCCCCCCCCCCCCEECCCCCEEEEEECC >Mature Secondary Structure MVKVMRYYLLLLLILTDKVIAFELVNDVTYFPSVVQGHHGNSKYSCDGIDSFQFEQNGSS CHHHHHHHHHHHHHHHCHHEEEHHHHHHHHCCHHHCCCCCCCCEECCCCCCEEECCCCCC KIYGTLDKDLMFCSNNIGHGLPSNGCDTSLEGYRTCSVTGVDIKGIDLTGENEFKYSSVS EEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECEEEEEEECCCCCEEECCCC DGQIHSCSSGQNVILGLNEQTEFSRVTLYSPCVVTFSSNHSEYRVKDVEMGGGAKIVLSS CCCEEECCCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEEEEECCCCEEEEEEC GDYYFESLTLNRGANIVALGDVRIFVKSKVNITDAKVNESEIDNFILLGYDDINVNGDSY CCEEEEEEEECCCCCEEEEEEEEEEEEECEEEEECCCCHHHCCCEEEEEEEEEECCCCCE VKGKLYSDKHVYLNGSSFIEGRVTSRYLRMNGNSVINQKKQIQKSHFRISFNSGALSCTS EEEEEECCCEEEECCCCEEECCEEEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEE KFISVQACANDNCSSQLTESAFVTLTKNGANYSEETFTGSTSTEVWHPQGGLVTLGLGVT EEEEEEECCCCCCHHHCCCCEEEEEEECCCCCCCCEECCCCCCEEECCCCCEEEEEEEEE VPSADYSCYIDGRLVTNAQCQLNFEDSGIYFDIDDSTACKNSNNFELFAVKKDQVTQQCV ECCCCEEEEECCEEEECCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEHHHHHHHHH PLFANKTKPISMVFNYITPDAAGINEAAKLTINSLNTPNASKVIDGGSSEVLQVHFDANG HHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHEECCCCCEEEEEEECCCC KALLNVNYPEAGKVELAAILTETISSTDGSTSETLILEHSDQFVAKADGFHFFNDSGRDG CEEEEECCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCCEEEECCCEEEECCCCCCC CTGASCELFAKAGADFKMNVKAVCGVDDGTAYKDRVPLKNFQLTDLKIKPVLQAPLVSNG CCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECEEECCCCCCC DIKDGSLGGLGLTSLSFTKANSAPLRLTDQTYFEVGAMSVALDGELNYLGASIPETHSSS CCCCCCCCCCEEEEEEEECCCCCCEEEECCCEEEEEEEEEEECCCEEEECCCCCCCCCCC EIFGRFSPYYLTVTANTSHPAAQCGSFTYMDQPFGFSTGEEPTLSIIGKSKSGAITNNYQ HHHCCCCCEEEEEEECCCCCHHHCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCC VGDWWRYHGKQWLERSYSDTSGATSADGAALLIVDESPISGTVEYYLVNGTNSVQRAYLS CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHC GAQLHYGRTASLATPFNGQFDLELSKADVTDKDGICYQDSADAACIGFTFDDIAKGDVFA CCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEEHHHCCCCCEEE LRYGRFVMQNAYGPSSEELRLEVGTQYVGASGEWLTNSEDNCSVFDTTSATESADAGLYL EECCHHEEECCCCCCCCEEEEEECCEEECCCCCEECCCCCCCEEEECCCCCCCCCCCEEE KPEPGLEAVQGFTQPVEGGQFGYIGLGKSLIYFPAPNTGGEVILQQHVSKWLKFYWNYNA CCCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHEEECCCE VGDLQDPRGTAHFGTYRGHDRIISWREVY ECCCCCCCCCCCCCEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA