| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is pheC [H]
Identifier: 167623210
GI number: 167623210
Start: 1556402
End: 1558612
Strand: Direct
Name: pheC [H]
Synonym: Shal_1276
Alternate gene names: 167623210
Gene position: 1556402-1558612 (Clockwise)
Preceding gene: 167623209
Following gene: 167623211
Centisome position: 29.78
GC content: 43.74
Gene sequence:
>2211_bases ATGAGCAGTGAAACGAGTAACGTAGAGTCTGAAGCTAAGCTTGCTGAACAAGATAAGCCCAAACAAAAGATGAGTATGTC GACGTTGGTTTTACTGTCATTTGCGGCGGGTATTGCGGCCGGACTGTTTTTTGGGGAGATGTTGGCGTGGATGTCTGTGA TTGGCGATGCCTTCATTAAACTGTTACAGATGACCATTATTCCCTACATCATCGTCTCACTGGTTTCTAGCCTTGGTAGC TTAACCATGGAACAAGCCAAATCCTTGGGGGTGAAGGTCGGCAAGCTAATGCTGGTGATCTGGATATTTGGTCTACTGAC GATGTACCTTATCAAATACACTTTTCCTGACTGGCAGGCGGGGGAGTTCTTTAGCCTTACCGCTCTGGAAGATCCAAATT CTGTGAACCTGCTCGATATCTATATTCCGTCAAATCCTTTTTTCTCACTCTCTAACAGCTATATTCCCGCGATTGTGCTG TTTTGTGTAGCGACCGGTATAGCACTTATCTCTATCGATAATAAAGAATCGCTAATGAAGCCGATGCAACTCTTGGGTGA GTCGTTTAATAAGGTGACTCAAAGTATCGTTAAGTTGATGCCTATAGGCATTTTTGCCATGACGGCGGCCACCGCTGGCA CCATGGACTTTGATGAGTTTCAAAAGCTGCAGGTCTATTTTGTAGCTCATGTGGTGATGACCGTTATTTTAACCTACTGG GTGTTGCCGGCGATTTTAGCGGTGATCACGCCGTTCTCCTATCGTGACATTACTGGCATTGCCAAAGACGCGATGATCAC CGCGTTTGCAGCGGGTAATATTTTTATCGTTATCCCTATTTTAATTGAGCGCACCAAAGAGCTGTTTCATAAATACAATC TTGGCAGTCAACAGAGTGACGATTATGCCAATATTATTATTCCCGTGGTGTTCAGCTTTCCTAATCTTGGCAAGTTACTC ACTATCGTCTTCGTGTTATTTGCGGCTTGGTTCTCAGGTAAGGAGCTAGATTTTTTAACTTACTTGCCTATGTCATTAAA TGGCTTGGTGAGCCTGTTTGGTAGTGTTTATCTAACGATTCCAATGTTGCTCGACTCGTTAGAGCTTTCTTCCGATCTGT TTCAGCTGTATATGGTGTCAAGTTTGTTCACCAGCCGATTCACTTCACTATTAGCGGCGATGAATATCTTTATTTTAGCG GTTGGCGGCACGGCCATGCTAGTGGGGGTCGCTAAAGTCAGTATGAAACGTTTAGTGATCTATAGTGCGTTAACGCCGGT GTTTATCGGTAGCTGTTTGTTAGGCTCAAGCTGGCTACTGAGTTCGATTGTAGATACCGACTATGAGATGGATGATGTCG TAGCGCAGATGAGCGCTGCCGAAAAAATACCGGATCAAGTAACCGCCTATAGTTGGGGTGAGCTTGCCGAAGCTAAAGGC CCACGCAATATACAACAGATAAGGGAAAGTGGCGTATTGAGAGTAGGTTATAACCCTATCCAGGTGCCTTTCTCTTTCTA TAATGCTGATAATCAATTAGTTGGTTTCGATGTCGAATTAATGAAGAAGCTGGCGTCGGAGATGGAGCTTAAAGTTGCAT TCGTTCCTTATACCTTTGCCAATGTATTAGACGGGATAAATCAAGGCCAGTTTGATATTGCGATATCAGGCTTACAGATG ACAACGAAGCGATTAGAACTCGTTGGCTTTACTACCCCGGTGTTGGATCTGCACTACGCTTTTGTGGTGAAAGATCACCG CGCAGATGAGTTTCAAACGGATAAGCAGATCCTCGAGGCTGACAAGATCCGCATCGCTTCAGTTGGTCAATATACGATTA TTCCTCATTTAGAAGAGACATTTCCCAATATGGAGTTTGAGACCATTCAGTCTGACCGCCTATTTTTTGAGGATGATGGT CAAACTTGGGACGGACTAATGATAAGCCTAGAGGCTGGAAAAACTTGGACAATCTTATACCCTGAATACACCACGCTTTA TAATCGTGAAGAGATTAAATCATTTCCGGCATCTTATGCGGTGGCTCGTGACAATGCGTCATTACAAACTTTTTTAAACA GTTGGTTAGAACTACAAAAGTCATCTGGTTATGTTGATAAGCTCTATGGCTATTGGATTTTAGGTGAAAATGCTAAGCCG AAAAAGCCTCGCTGGTCAGTCATTAAGGATGTGTTACATTGGGTTGAGTGA
Upstream 100 bases:
>100_bases CCAAAGGATAAGATTGCCCAATATTTAGCTTGCTATCTTGAGGCCATTGATGATTGCTGCAGTAAGTGTTCATCAGAACC AGCGTTGCAAGGAGGCACGA
Downstream 100 bases:
>100_bases AAATAACAATAACAAAAGTATAGTCGTACGCGACAAGGAGCACTGTTGGTGAAGAAGCTTACTGTGGTACTGCTCATGTT GGTCGCTCAGTCTGCGGCCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Prephenate dehydratase; Arogenate dehydratase [H]
Number of amino acids: Translated: 736; Mature: 735
Protein sequence:
>736_residues MSSETSNVESEAKLAEQDKPKQKMSMSTLVLLSFAAGIAAGLFFGEMLAWMSVIGDAFIKLLQMTIIPYIIVSLVSSLGS LTMEQAKSLGVKVGKLMLVIWIFGLLTMYLIKYTFPDWQAGEFFSLTALEDPNSVNLLDIYIPSNPFFSLSNSYIPAIVL FCVATGIALISIDNKESLMKPMQLLGESFNKVTQSIVKLMPIGIFAMTAATAGTMDFDEFQKLQVYFVAHVVMTVILTYW VLPAILAVITPFSYRDITGIAKDAMITAFAAGNIFIVIPILIERTKELFHKYNLGSQQSDDYANIIIPVVFSFPNLGKLL TIVFVLFAAWFSGKELDFLTYLPMSLNGLVSLFGSVYLTIPMLLDSLELSSDLFQLYMVSSLFTSRFTSLLAAMNIFILA VGGTAMLVGVAKVSMKRLVIYSALTPVFIGSCLLGSSWLLSSIVDTDYEMDDVVAQMSAAEKIPDQVTAYSWGELAEAKG PRNIQQIRESGVLRVGYNPIQVPFSFYNADNQLVGFDVELMKKLASEMELKVAFVPYTFANVLDGINQGQFDIAISGLQM TTKRLELVGFTTPVLDLHYAFVVKDHRADEFQTDKQILEADKIRIASVGQYTIIPHLEETFPNMEFETIQSDRLFFEDDG QTWDGLMISLEAGKTWTILYPEYTTLYNREEIKSFPASYAVARDNASLQTFLNSWLELQKSSGYVDKLYGYWILGENAKP KKPRWSVIKDVLHWVE
Sequences:
>Translated_736_residues MSSETSNVESEAKLAEQDKPKQKMSMSTLVLLSFAAGIAAGLFFGEMLAWMSVIGDAFIKLLQMTIIPYIIVSLVSSLGS LTMEQAKSLGVKVGKLMLVIWIFGLLTMYLIKYTFPDWQAGEFFSLTALEDPNSVNLLDIYIPSNPFFSLSNSYIPAIVL FCVATGIALISIDNKESLMKPMQLLGESFNKVTQSIVKLMPIGIFAMTAATAGTMDFDEFQKLQVYFVAHVVMTVILTYW VLPAILAVITPFSYRDITGIAKDAMITAFAAGNIFIVIPILIERTKELFHKYNLGSQQSDDYANIIIPVVFSFPNLGKLL TIVFVLFAAWFSGKELDFLTYLPMSLNGLVSLFGSVYLTIPMLLDSLELSSDLFQLYMVSSLFTSRFTSLLAAMNIFILA VGGTAMLVGVAKVSMKRLVIYSALTPVFIGSCLLGSSWLLSSIVDTDYEMDDVVAQMSAAEKIPDQVTAYSWGELAEAKG PRNIQQIRESGVLRVGYNPIQVPFSFYNADNQLVGFDVELMKKLASEMELKVAFVPYTFANVLDGINQGQFDIAISGLQM TTKRLELVGFTTPVLDLHYAFVVKDHRADEFQTDKQILEADKIRIASVGQYTIIPHLEETFPNMEFETIQSDRLFFEDDG QTWDGLMISLEAGKTWTILYPEYTTLYNREEIKSFPASYAVARDNASLQTFLNSWLELQKSSGYVDKLYGYWILGENAKP KKPRWSVIKDVLHWVE >Mature_735_residues SSETSNVESEAKLAEQDKPKQKMSMSTLVLLSFAAGIAAGLFFGEMLAWMSVIGDAFIKLLQMTIIPYIIVSLVSSLGSL TMEQAKSLGVKVGKLMLVIWIFGLLTMYLIKYTFPDWQAGEFFSLTALEDPNSVNLLDIYIPSNPFFSLSNSYIPAIVLF CVATGIALISIDNKESLMKPMQLLGESFNKVTQSIVKLMPIGIFAMTAATAGTMDFDEFQKLQVYFVAHVVMTVILTYWV LPAILAVITPFSYRDITGIAKDAMITAFAAGNIFIVIPILIERTKELFHKYNLGSQQSDDYANIIIPVVFSFPNLGKLLT IVFVLFAAWFSGKELDFLTYLPMSLNGLVSLFGSVYLTIPMLLDSLELSSDLFQLYMVSSLFTSRFTSLLAAMNIFILAV GGTAMLVGVAKVSMKRLVIYSALTPVFIGSCLLGSSWLLSSIVDTDYEMDDVVAQMSAAEKIPDQVTAYSWGELAEAKGP RNIQQIRESGVLRVGYNPIQVPFSFYNADNQLVGFDVELMKKLASEMELKVAFVPYTFANVLDGINQGQFDIAISGLQMT TKRLELVGFTTPVLDLHYAFVVKDHRADEFQTDKQILEADKIRIASVGQYTIIPHLEETFPNMEFETIQSDRLFFEDDGQ TWDGLMISLEAGKTWTILYPEYTTLYNREEIKSFPASYAVARDNASLQTFLNSWLELQKSSGYVDKLYGYWILGENAKPK KPRWSVIKDVLHWVE
Specific function: Forms alternative pathway for phenylalanine biosynthesis. Can catalyze two reactions:prephenate dehydratase and arogenate dehydratase. May have a role in chemotaxis or transport [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: =4.2.1.51; =4.2.1.91 [H]
Molecular weight: Translated: 82186; Mature: 82055
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSETSNVESEAKLAEQDKPKQKMSMSTLVLLSFAAGIAAGLFFGEMLAWMSVIGDAFIK CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLQMTIIPYIIVSLVSSLGSLTMEQAKSLGVKVGKLMLVIWIFGLLTMYLIKYTFPDWQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GEFFSLTALEDPNSVNLLDIYIPSNPFFSLSNSYIPAIVLFCVATGIALISIDNKESLMK CCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHH PMQLLGESFNKVTQSIVKLMPIGIFAMTAATAGTMDFDEFQKLQVYFVAHVVMTVILTYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLPAILAVITPFSYRDITGIAKDAMITAFAAGNIFIVIPILIERTKELFHKYNLGSQQSD HHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHCCCCCCCC DYANIIIPVVFSFPNLGKLLTIVFVLFAAWFSGKELDFLTYLPMSLNGLVSLFGSVYLTI CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHH PMLLDSLELSSDLFQLYMVSSLFTSRFTSLLAAMNIFILAVGGTAMLVGVAKVSMKRLVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHH YSALTPVFIGSCLLGSSWLLSSIVDTDYEMDDVVAQMSAAEKIPDQVTAYSWGELAEAKG HHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCC PRNIQQIRESGVLRVGYNPIQVPFSFYNADNQLVGFDVELMKKLASEMELKVAFVPYTFA CHHHHHHHHCCEEEECCCCEECCEEEECCCCCEEECCHHHHHHHHHHHEEEEEEECHHHH NVLDGINQGQFDIAISGLQMTTKRLELVGFTTPVLDLHYAFVVKDHRADEFQTDKQILEA HHHCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHH DKIRIASVGQYTIIPHLEETFPNMEFETIQSDRLFFEDDGQTWDGLMISLEAGKTWTILY CCEEEEECCCEEECCCHHHHCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCEEEEEC PEYTTLYNREEIKSFPASYAVARDNASLQTFLNSWLELQKSSGYVDKLYGYWILGENAKP CCHHHHCCHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCC KKPRWSVIKDVLHWVE CCCHHHHHHHHHHHCC >Mature Secondary Structure SSETSNVESEAKLAEQDKPKQKMSMSTLVLLSFAAGIAAGLFFGEMLAWMSVIGDAFIK CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLQMTIIPYIIVSLVSSLGSLTMEQAKSLGVKVGKLMLVIWIFGLLTMYLIKYTFPDWQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GEFFSLTALEDPNSVNLLDIYIPSNPFFSLSNSYIPAIVLFCVATGIALISIDNKESLMK CCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHH PMQLLGESFNKVTQSIVKLMPIGIFAMTAATAGTMDFDEFQKLQVYFVAHVVMTVILTYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VLPAILAVITPFSYRDITGIAKDAMITAFAAGNIFIVIPILIERTKELFHKYNLGSQQSD HHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCEEEEHHHHHHHHHHHHHHHCCCCCCCC DYANIIIPVVFSFPNLGKLLTIVFVLFAAWFSGKELDFLTYLPMSLNGLVSLFGSVYLTI CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHH PMLLDSLELSSDLFQLYMVSSLFTSRFTSLLAAMNIFILAVGGTAMLVGVAKVSMKRLVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHH YSALTPVFIGSCLLGSSWLLSSIVDTDYEMDDVVAQMSAAEKIPDQVTAYSWGELAEAKG HHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCC PRNIQQIRESGVLRVGYNPIQVPFSFYNADNQLVGFDVELMKKLASEMELKVAFVPYTFA CHHHHHHHHCCEEEECCCCEECCEEEECCCCCEEECCHHHHHHHHHHHEEEEEEECHHHH NVLDGINQGQFDIAISGLQMTTKRLELVGFTTPVLDLHYAFVVKDHRADEFQTDKQILEA HHHCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHH DKIRIASVGQYTIIPHLEETFPNMEFETIQSDRLFFEDDGQTWDGLMISLEAGKTWTILY CCEEEEECCCEEECCCHHHHCCCCEEEEECCCCEEEECCCCCCCCEEEEEECCCEEEEEC PEYTTLYNREEIKSFPASYAVARDNASLQTFLNSWLELQKSSGYVDKLYGYWILGENAKP CCHHHHCCHHHHHHCCCHHEEECCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCCCC KKPRWSVIKDVLHWVE CCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1733946; 10984043; 8515238; 7604006 [H]