| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167623203
Identifier: 167623203
GI number: 167623203
Start: 1548367
End: 1548705
Strand: Direct
Name: 167623203
Synonym: Shal_1269
Alternate gene names: NA
Gene position: 1548367-1548705 (Clockwise)
Preceding gene: 167623199
Following gene: 167623204
Centisome position: 29.62
GC content: 47.2
Gene sequence:
>339_bases ATGATGCTCATTGCTCTGGTGAGCGGCTGCTCAATAGGACATGCATATAAGGCGGCAAAAGCGATGGCAAATTATGAGGT GATGGGCACCGCTGCGCCAGAATTTTCCTTCGAAGAGATGCGCATGACGTTTCCTAAGCCGAGATCGGCGGATAGGACAA AGCTTCTGACTTGCTTCACCACTACGGGTCTATTTGCCGATACCAGCGAGAACTCTGCAAGAAAGGTGGCTAACGCGTAT CTAAAAACCAAGTTACCTCACAGGATCACCACTTCTTCAGAGTTCTTTGACCATAATGGCCATGTTTGTTTTGAGTTTGA AACCGTGATTAACCACTAA
Upstream 100 bases:
>100_bases GCAATACTAAGAGCTGAGTAGTTTTCTAGTAATCGATAGCTTGGCACATTGCGGTTATCAAATTAAATGGAGACTGATTG TGAAAAGAAAATTATCGATA
Downstream 100 bases:
>100_bases CCATTAGCCGTAGTCGGAGTGATTATGAAAACATTACTTATCAATACACTCGTTGGTGTGTTTATTTTAGCCCAAGCTAT TCCCACTCAAGCCGTTGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 112; Mature: 112
Protein sequence:
>112_residues MMLIALVSGCSIGHAYKAAKAMANYEVMGTAAPEFSFEEMRMTFPKPRSADRTKLLTCFTTTGLFADTSENSARKVANAY LKTKLPHRITTSSEFFDHNGHVCFEFETVINH
Sequences:
>Translated_112_residues MMLIALVSGCSIGHAYKAAKAMANYEVMGTAAPEFSFEEMRMTFPKPRSADRTKLLTCFTTTGLFADTSENSARKVANAY LKTKLPHRITTSSEFFDHNGHVCFEFETVINH >Mature_112_residues MMLIALVSGCSIGHAYKAAKAMANYEVMGTAAPEFSFEEMRMTFPKPRSADRTKLLTCFTTTGLFADTSENSARKVANAY LKTKLPHRITTSSEFFDHNGHVCFEFETVINH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12489; Mature: 12489
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 8.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLIALVSGCSIGHAYKAAKAMANYEVMGTAAPEFSFEEMRMTFPKPRSADRTKLLTCFT CEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEEEE TTGLFADTSENSARKVANAYLKTKLPHRITTSSEFFDHNGHVCFEFETVINH CCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEEEEEECCC >Mature Secondary Structure MMLIALVSGCSIGHAYKAAKAMANYEVMGTAAPEFSFEEMRMTFPKPRSADRTKLLTCFT CEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEEEEE TTGLFADTSENSARKVANAYLKTKLPHRITTSSEFFDHNGHVCFEFETVINH CCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA