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The map label for this gene is ytrP [H]

Identifier: 167623178

GI number: 167623178

Start: 1516435

End: 1517679

Strand: Reverse

Name: ytrP [H]

Synonym: Shal_1244

Alternate gene names: 167623178

Gene position: 1517679-1516435 (Counterclockwise)

Preceding gene: 167623182

Following gene: 167623173

Centisome position: 29.04

GC content: 42.97

Gene sequence:

>1245_bases
ATGCTCATTAAAGATAGCTTAAAGAGAAAAAAAATAGACTCAATGGGGCTAAAAACGCACCTAGCGCTTGTAAGCGTCCC
TATGCTATTACTGCTTGTCTGCTGGGAAGGCCTACTTAATATTAATGCTACTTTTTCTCTTGCATTCATCGCAGTTATCT
ACCTTATCGGCTACGGCCTGAGCTATAACTTTCATCAGCGCCGGTTAAATCGTCTGTGGAAGCATCTACAACAAGTTATT
CACCTCAATAATACGACCTTCGAACTGGTTCATATTGCTAACCAATACCCAGATGAAGGTGAGTTTTTAAATGCCTTATT
AGCTAAAGCGCTCAATAGCATTGATGCGGCCGAGATGGGTTCAATTATCAAAGTGAATAATGATACCGAAGAACTCTATT
TCGAATCGGCCATAGGTATCGATATAGAAAAGCTAAAAAAGATTAACCTCAAGCTTAAAGAATCATTCCAATATCGATTT
ACAAAAGGTCGCTGTGATCGGGTGGTCGTAATTAATAACATGGCGAATATTAACGCCCACAGCACACTTGAACCGACTGA
CCAACAAGCATTACTCATGACACCCGAAGCACCAATAAAATCGACCCTGTCGAGCCCTATCCATATCGACGGTAAACTTT
ATGGCATGCTTAATTTAGATAGCGCCAAGCTCAAAGCCTTTAGCCATTACGATAGAAACTTGGCAGCAGTTTTAACCCAT
GAGGCCGCTAATGCGATTGCCCTTTATCAAAAGTCCCGTCAAATTAGTCACTTGGCGAACTTCGATAGCTTAACTCAGCT
GTATAACCGTCAACGTTTCGAGGCTGGCGAGCAAGAGTGGCAAATAAATTCGGATTTAGGCAGCTACCTAGTCATCTTAG
ATTTAGATAACTTGAAAGCCATTAATGACACCATGGGTCATCAAGCGGGTGATAAGGCATTACAAGGTTTAGCCGCTGCT
CTTAAGCAGCAATGGCACCTGAAACACTTGGTTGCACGGTATGGTGGCGATGAGTTTATTGCCCTATGTCATGGACCACT
CGGCCAGATTGAGGACGACCTTAAGCAGATCCGGCGAACTCTGGCAGAGCAGTATGCCTGCGAAATCGCCTCAGAGGATC
AGAATGCAGATGTTAAAGTGGAGTTTAGCGTCGGCATCGCCAAATACTGTGGAGATTGGAACAAATGCTTTAAAGCTGCT
GACGATTATATGTATCAAAATAAGCGGTTAAATCGACAAGACTAG

Upstream 100 bases:

>100_bases
TTACCTAGATCCCACAATCAAAATCCACTCACAGAGCTCCATTAAAACTAATTTAACTATTGATATAATGATTAACTTTG
TCCGTGGTTTTTAATAAATA

Downstream 100 bases:

>100_bases
CTCTATAGTCATAGATGCGAGCACTGCGACAACCAGAAGCTTGACGAAAATTTGAGAAAAAAGCCTCTACAGATGTAGAG
GCTTAGTCAGATTAGTCAGT

Product: GAF sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLIKDSLKRKKIDSMGLKTHLALVSVPMLLLLVCWEGLLNINATFSLAFIAVIYLIGYGLSYNFHQRRLNRLWKHLQQVI
HLNNTTFELVHIANQYPDEGEFLNALLAKALNSIDAAEMGSIIKVNNDTEELYFESAIGIDIEKLKKINLKLKESFQYRF
TKGRCDRVVVINNMANINAHSTLEPTDQQALLMTPEAPIKSTLSSPIHIDGKLYGMLNLDSAKLKAFSHYDRNLAAVLTH
EAANAIALYQKSRQISHLANFDSLTQLYNRQRFEAGEQEWQINSDLGSYLVILDLDNLKAINDTMGHQAGDKALQGLAAA
LKQQWHLKHLVARYGGDEFIALCHGPLGQIEDDLKQIRRTLAEQYACEIASEDQNADVKVEFSVGIAKYCGDWNKCFKAA
DDYMYQNKRLNRQD

Sequences:

>Translated_414_residues
MLIKDSLKRKKIDSMGLKTHLALVSVPMLLLLVCWEGLLNINATFSLAFIAVIYLIGYGLSYNFHQRRLNRLWKHLQQVI
HLNNTTFELVHIANQYPDEGEFLNALLAKALNSIDAAEMGSIIKVNNDTEELYFESAIGIDIEKLKKINLKLKESFQYRF
TKGRCDRVVVINNMANINAHSTLEPTDQQALLMTPEAPIKSTLSSPIHIDGKLYGMLNLDSAKLKAFSHYDRNLAAVLTH
EAANAIALYQKSRQISHLANFDSLTQLYNRQRFEAGEQEWQINSDLGSYLVILDLDNLKAINDTMGHQAGDKALQGLAAA
LKQQWHLKHLVARYGGDEFIALCHGPLGQIEDDLKQIRRTLAEQYACEIASEDQNADVKVEFSVGIAKYCGDWNKCFKAA
DDYMYQNKRLNRQD
>Mature_414_residues
MLIKDSLKRKKIDSMGLKTHLALVSVPMLLLLVCWEGLLNINATFSLAFIAVIYLIGYGLSYNFHQRRLNRLWKHLQQVI
HLNNTTFELVHIANQYPDEGEFLNALLAKALNSIDAAEMGSIIKVNNDTEELYFESAIGIDIEKLKKINLKLKESFQYRF
TKGRCDRVVVINNMANINAHSTLEPTDQQALLMTPEAPIKSTLSSPIHIDGKLYGMLNLDSAKLKAFSHYDRNLAAVLTH
EAANAIALYQKSRQISHLANFDSLTQLYNRQRFEAGEQEWQINSDLGSYLVILDLDNLKAINDTMGHQAGDKALQGLAAA
LKQQWHLKHLVARYGGDEFIALCHGPLGQIEDDLKQIRRTLAEQYACEIASEDQNADVKVEFSVGIAKYCGDWNKCFKAA
DDYMYQNKRLNRQD

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=32.5301204819277, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787056, Length=187, Percent_Identity=28.8770053475936, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=33.9869281045752, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=26.8571428571429, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=33.9393939393939, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=228, Percent_Identity=29.8245614035088, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=28.7425149700599, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788381, Length=90, Percent_Identity=42.2222222222222, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 46901; Mature: 46901

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKDSLKRKKIDSMGLKTHLALVSVPMLLLLVCWEGLLNINATFSLAFIAVIYLIGYGL
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
SYNFHQRRLNRLWKHLQQVIHLNNTTFELVHIANQYPDEGEFLNALLAKALNSIDAAEMG
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHCCCHHHCC
SIIKVNNDTEELYFESAIGIDIEKLKKINLKLKESFQYRFTKGRCDRVVVINNMANINAH
CEEEECCCHHHHHHHHHCCCCHHHHHHHCHHHHHHHHEEECCCCCCEEEEEECCCCCCCC
STLEPTDQQALLMTPEAPIKSTLSSPIHIDGKLYGMLNLDSAKLKAFSHYDRNLAAVLTH
CCCCCCCCCEEEECCCCCHHHHCCCCEEECCEEEEEEECCHHHHHHHHHCCCCHHHHHHH
EAANAIALYQKSRQISHLANFDSLTQLYNRQRFEAGEQEWQINSDLGSYLVILDLDNLKA
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCHH
INDTMGHQAGDKALQGLAAALKQQWHLKHLVARYGGDEFIALCHGPLGQIEDDLKQIRRT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
LAEQYACEIASEDQNADVKVEFSVGIAKYCGDWNKCFKAADDYMYQNKRLNRQD
HHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLIKDSLKRKKIDSMGLKTHLALVSVPMLLLLVCWEGLLNINATFSLAFIAVIYLIGYGL
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
SYNFHQRRLNRLWKHLQQVIHLNNTTFELVHIANQYPDEGEFLNALLAKALNSIDAAEMG
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHCCCHHHCC
SIIKVNNDTEELYFESAIGIDIEKLKKINLKLKESFQYRFTKGRCDRVVVINNMANINAH
CEEEECCCHHHHHHHHHCCCCHHHHHHHCHHHHHHHHEEECCCCCCEEEEEECCCCCCCC
STLEPTDQQALLMTPEAPIKSTLSSPIHIDGKLYGMLNLDSAKLKAFSHYDRNLAAVLTH
CCCCCCCCCEEEECCCCCHHHHCCCCEEECCEEEEEEECCHHHHHHHHHCCCCHHHHHHH
EAANAIALYQKSRQISHLANFDSLTQLYNRQRFEAGEQEWQINSDLGSYLVILDLDNLKA
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCHH
INDTMGHQAGDKALQGLAAALKQQWHLKHLVARYGGDEFIALCHGPLGQIEDDLKQIRRT
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
LAEQYACEIASEDQNADVKVEFSVGIAKYCGDWNKCFKAADDYMYQNKRLNRQD
HHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]